H4: An Introduction[The mtDNA H Haplogroup Project] 


H4: An Introduction

FTDNA-hosted site is mtDNA Haplogroup H Project: H4

Membership

Project membership contains a mixed group of results. There are those who have taken only a basic test placing them in Haplogroup H with HVR1 results. There are some who have extended their testing to HVR2. Many have taken the mtDNA Full Genome Sequence test that includes all of the control and coding regions.

FamilyTreeDNA
NucleotidesmtDNAmtDNAPlusmtDNA Full Sequence
Hypervariable Region 2 00001-00574 X X
Coding Region 00575-16000 X
Hypervariable Region 1 16001-16569 X X X


All results considered in this section come from members who have taken ether the mtDNA Haplogroup H subclade test, mt-H, or the mtDNA Full Genome Sequence test, FGS, and who are positive for the H4 mutations.

Completenessn
HVR1 48
HVR1&2 38
FGS


H4 in the H Tree

The current tree for Haplogroup H follows Roostalu 2007.

  • H {A2706A,C7028C}
    • H*
    • ..
    • H4 {C3992T,T5004C,G9123A}
      • H4a {A4024G,C14365T,A14582G}
        • H4a1 {G8269A}
          • H4a1a {A10044G}
      • H4b {T10166C}
    • ..

Major Papers

Finnila 2001
SNPsHaplogroupNotesnPercentage
A2706A,C7028C H Mutations in common with CRS 31 100%
various H* see bellow 13 42%
G3010A H1 Mutation away from CRS 14 45%
A1438G,A4769G H2 Mutation away from CRS 4 13%


Finnila collected 480 samples from Red Cross offices in several Finnish provinces. Of these 188 were Hs using the 7025AluI restriction site. 31 Hs were selected for an mtDNA full sequence. Any H4s found in Finnila would have been classified as H* or H(xH1,xH2). An examination of the full sequences submitted to GenBank reveals that there weren't any H4s in the sample.

Herrnstadt 2002
SNPsHaplogroupNotes
A2706A,C7028C H Mutations in common with CRS
G3010A H1
1438A, 4769A H2
T6776C H3 Mutation away from CRS
C3992T,A4024G,T5004C,A14582G H4 Mutation away from CRS


Herrnstadt worked with 560 blood samples and frozen brain samples from donors originating in the United States and the British Isles. This paper named for the first time the subclades of H3 and H4. Unfortunately they only sequenced the coding region.

Coble 2004
SNPsHaplogroupNotes
A2706A,C7028C H Mutations in common with CRS
C3992T,A4024G,T5004C,A14582G H4 Mutation away from CRS


Coble focused on rapid forensic identification by choosing common European HVR results and looking for coding region differences. Study used anonymized samples from the U.S. Armed Forces DNA Identification Laboratory. Ten of the sequences published to Genbank from this study are H4s. See GenBank Sequences page for the sequences.

Achilli 2004
SNPsHaplogroupNotes
A2706A,C7028C H Mutations in common with CRS
C3992T,A4024G,T5004C,A14582G H4 Mutations away from CRS


Achilli used 62 full sequences to examine the established H subclades, H1-H15. The focus of the paper was on the age and origin of H1 and H3. Sample 11 in the tree is an H4.

Loogvali 2004
SNPsHaplogroupNotes
A2706A,C7028C H Mutations in common with CRS
C3992T,A4024G,T5004C,A14582G H4


FTDNA mt-H
SNPsHaplogroupNotes
A2706A,C7028C H Mutations in common with CRS
A14582G H4


Brandstätter 2006
SNPsHaplogroupNotes
A2706A,C7028C H Mutations in common with CRS
H
H
H


Brandstätter screened 2214 Western European samples for the H mutations A2706A and C7028C. The 859 Hs then had full sequences run. She used existing GenBank submisions and the new sequences to reevaluate the tree and recomended changes as part of a new screening panel for H subclades.

Roostalu 2007
SNPsHaplogroupNotes
A2706A,C7028C H Mutations in common with CRS
C3992T,T5004C,G9123A H4
A4024G,C14365T,A14582G H4a
G8269A H4a1
A10044G H4a1a
514-515d,A10166G H4b Need to check citation.

Geographic Distribution

All H4s

CountryCount
Denmark 2
England 5
Finland 1
Germany 7
Ireland 6
Italy 1
Norway 3
Scotland 3
Switzerland 2
Ukraine 1
United Kingdom 6
Unknown Origin 10
Total 46


Map of all H4s

Full Sequence H4

Back Soon..

Full Sequence H4a

Map of FGS H4a

Full Sequence H4a1

Map of FGS H4a1

Full Sequence H4a1a

Map of FGS H4a1a

Sources

Achilli 2004

The molecular dissection of mtDNA haplogroup H confirms that the Franco-Cantabrian glacial refuge was a major source for the European gene pool.
Achilli A, Rengo C, Magri C, Battaglia V, Olivieri A, Scozzari R, Cruciani F, Zeviani M, Briem E, Carelli V, Moral P, Dugoujon JM, Roostalu U, Loogväli EL, Kivisild T, Bandelt HJ, Richards M, Villems R, Santachiara-Benerecetti AS, Semino O, Torroni A
Am J Hum Genet75p910-8(2004 Nov)

Andrews 1999

Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA.
Andrews RM, Kubacka I, Chinnery PF, Lightowlers RN, Turnbull DM, Howell N
Nat Genet23p147(1999 Oct)

Coble 2004

Single nucleotide polymorphisms over the entire mtDNA genome that increase the power of forensic testing in Caucasians.
Coble MD, Just RS, O'Callaghan JE, Letmanyi IH, Peterson CT, Irwin JA, Parsons TJ
Int J Legal Med118p137-46(2004 Jun)

Brandstätter 2006

Dissection of mitochondrial superhaplogroup H using coding region SNPs.
Brandstätter A, Salas A, Niederstätter H, Gassner C, Carracedo A, Parson W
Electrophoresis27p2541-50(2006 Jul)

Finnila 2001

Phylogenetic network for European mtDNA.
Finnilä S, Lehtonen MS, Majamaa K
Am J Hum Genet68p1475-84(2001 Jun)

Herrnstadt 2002

Reduced-median-network analysis of complete mitochondrial DNA coding-region sequences for the major African, Asian, and European haplogroups.
Herrnstadt C, Elson JL, Fahy E, Preston G, Turnbull DM, Anderson C, Ghosh SS, Olefsky JM, Beal MF, Davis RE, Howell N
Am J Hum Genet70p1152-71(2002 May)

Loogväli 2004

Disuniting uniformity: a pied cladistic canvas of mtDNA haplogroup H in Eurasia.
Loogväli EL, Roostalu U, Malyarchuk BA, Derenko MV, Kivisild T, Metspalu E, Tambets K, Reidla M, Tolk HV, Parik J, Pennarun E, Laos S, Lunkina A, Golubenko M, Barac L, Pericic M, Balanovsky OP, Gusar V, Khusnutdinova EK, Stepanov V, Puzyrev V, Rudan P, Balanovska EV, Grechanina E, Richard C, Moisan JP, Chaventré A, Anagnou NP, Pappa KI, Michalodimitrakis EN, Claustres M, Gölge M, Mikerezi I, Usanga E, Villems R
Mol Biol Evol21p2012-21(2004 Nov)

Roostalu 2007

Origin and expansion of haplogroup H, the dominant human mitochondrial DNA lineage in West Eurasia: the Near Eastern and Caucasian perspective.
Roostalu U, Kutuev I, Loogväli EL, Metspalu E, Tambets K, Reidla M, Khusnutdinova EK, Usanga E, Kivisild T, Villems R
Mol Biol Evol24p436-48(2007 Feb)


results/h4/helena.txt · Last modified: 06/22/2008 11:48 by goddess