progress:2008[The mtDNA H Haplogroup Project] 


Introduction

When using mtDNA to further our genealogical research, we usually have two goals. The first is to prove or add to the substance of our proof that our particular ancestor was the daughter in a family. Lost to history through marriage, destroyed records, and failure to be recorded in public documents, we are lucky to find supporting evidence. If there are land records and wills we may be able to build a case for preponderance-of-evidence as proof of a relationship. It is more likely though that we will reach a brick wall where our ancestress is a woman traveling with her small children to join her husband or an eleven year old child in the census who is living with a family that she was not with in the prior census. mtDNA provides us an opportunity to substantiate evidence. We may also discover a relationship based on knowledge of surrounding families. Our case though must be clear. We must know the demographics of her neighbors. We must examine the frequencies and breadth of the mtDNA in the area. Knowing this we may calculate for the odds of two people randomly matching each other.

The second goal is to learn the deep ethnic history of our most distant of maternal grandmothers. We as Hs, are all descended from a woman who came to Eurasia from Africa. In the coming years we hope to learn more about the particular path each of her daughters, granddaughters and great-great-great-granddaughters took. To learn this we are studying the geographic origins of each subclade and the haplotypes within the subclades.

To answer either question we must be sure that we understand the tree of descent that connects us. As much as a misattributed marriage record may confuse us as genealogists, so too does a false branch in the phylogenetic tree. Here I will look at what we know at the beginning of the mtDNA Haplogroup Project's third year and where we are going.

Status

The H Haplogroup Project is now at over 2300 members. Haplotype information was assessed at 2348 members for numbers and frequencies of unique haplotypes.

Geography:

Geographic information was extracted from the database at 2348 members.

Origin x Percent
Algeria 1 0.04
Armenia 1 0.04
Austria 12 0.51
Austria-Hungary 8 0.34
Azerbaijan 1 0.04
Azores 7 0.30
Belarus 9 0.38
Belgium 5 0.21
Bohemia 9 0.38
Bosnia 1 0.04
British Isles 718 30.58
Bulgaria 1 0.04
Canary Islands 2 0.09
Croatia 8 0.34
Cyprus 2 0.09
Czech Republic 7 0.30
Czechoslovakia 3 0.13
Denmark 21 0.89
Finland 52 2.21
France 57 2.43
Galicia 1 0.04
Germany 221 9.41
Greece 8 0.34
Holland 9 0.38
Hungary 20 0.85
Iceland 2 0.09
India 3 0.13
Iran 3 0.13
Israel 2 0.09
Italy 62 2.64
Latvia 5 0.21
Lebanon 2 0.09
Lithuania 21 0.89
Luxemburg 2 0.09
Malta 1 0.04
Moldova 5 0.21
Morocco 1 0.04
Netherlands 29 1.24
Norway 56 2.39
Poland 65 2.77
Portugal 14 0.60
Prussia 7 0.30
Romania 7 0.30
Russia 20 0.85
Serbia 1 0.04
Sicily 12 0.51
Slovakia 10 0.43
Slovenia 1 0.04
Spain 28 1.19
Sweden 49 2.09
Switzerland 15 0.64
Turkey 5 0.21
Ukraine 27 1.15
Yugoslavia 2 0.09
Unknown Origin 707 30.11
Total 2348 100.00

Origin x Percent
British Isles 203 28.27
England 234 32.59
Ireland 166 23.12
Isle of Man 1 0.14
Northern Ireland 7 0.97
Scotland 82 11.42
Wales 25 3.48
Total 718 100.00

The most dramatic change to participant origins has been the drop in percentage from the British Isles, 42.78% to 30.58%.

SNPs:

A Single Nucleotide Polymorphism or SNP is a change to a single point in the mtDNA's code. Control region SNPs do not usually by themselves point to a single clade, subclade, or ethnic origin.  Combinations of SNPs form haplotypes that point to a common ancestress.

A total of 154 HVR1 mutations have been found while 195 participants match CRS at HVR1.

037G 111G 146G 172C 184T 213A 223T 243C 262T 283G 293C 304C 324C 354T 398A 524C
038G 111T 147T 174T 185T 214T 224C 245T 263C 284G 293G 309G 325C 355T 399G 525G
042A 114T 148T 176T 188T 215G 234T 248T 265G 286T 294.1A 311C 327A 356C 400T 526A
051G 124C 150T 177G 189C 216G 235G 249C 266T 287T 294G 311G 327T 357C 422C 527T
066G 126C 153A 179T 192A 217C 239A 254G 267T 288C 294T 312G 335G 360T 445C
067T 129A 154C 180G 192T 218T 239G 256T 269G 289G 295T 316G 342C 362C 465T
080G 134T 162G 182C 193T 219G 239T 258G 270T 290G 298C 318G 343G 366T 468C
092C 136C 167T 183C 195C 220G 240G 259T 272G 290T 299G 318T 344T 368C 482G
093C 140C 168T 183G 209C 221T 241G 260T 274A 291T 300G 319A 346C 390A 497G
111A 145A 170G 184A 212G 222T 242T 261T 278T 292T 302G 320T 352C 391A 519C

A total of 126 HVR2 mutations have been found.

010C 058C 073G 153G 198T 227G 256T 292C 327T 417A 485C 522- 533G
016T 060.1T 093G 182T 199C 228A 257G 293C 335G 444G 493G 523- 537T
041T 061T 095C 183G 200G 234G 262T 295A 337- 453C 498- 524.1A 545A
042.1G 063C 114T 185A 204C 235G 263G 309.1C 340T 455.1T 499A 524.1C 553T
044.1C 064T 131C 186A 205A 236C 264T 309.2C 373G 456T 502T 524.2A 573.1C
046C 065C 143A 186T 207A 239C 267C 309.3C 380A 459- 503G 524.2C 573.2C
055C 066A 146C 189G 210G 242T 281G 310C 385G 466C 512C 524.3A
056.1C 071A 150T 194T 214G 246G 288G 315.1C 391C 470G 513A 524.3C
057C 072C 151T 195C 217C 249- 291.1A 315.2C 396T 471C 520T 524.4A
057G 072G 152C 196C 224C 251A 292.1A 316A 408A 477C 521G 524.4C

Haplotypes:

There are now 337 unique HVR1 haplotypes. The twenty most frequent ones are:

HVR1 x
172C,304C,311C 17
189C,356C,519C 17
239T,519C 17
261T,519C 25
311C 25
129A,316G,519C 27
293G,311C 27
093C,519C 30
354T 30
162G,519C 31
189C,356C,362C,519C 33
162G,209C,519C 35
263C,519C 37
129A,519C 42
311C,519C 56
189C,519C 63
362C,482G 81
304C 114
CRS 195
519C 711

210, 62.31%, of the haplotypes are singletons.

There are 318 unique HVR2 haplotypes. The twenty most frequent ones are:

HVR2 x
263G,309.1C,315.1C,477C 8
263G,309.1C,315.1C,522-,523- 8
73G,263G,309.1C,315.1C,522-,523- 8
73G,263G,315.1C,522-,523- 10
146C,263G,309.1C,315.1C 12
93G,263G,315.1C 12
195C,263G,309.1C,315.1C 13
239C,263G,309.1C,309.2C,315.1C 13
239C,263G,309.1C,315.1C 13
263G,315.1C,456T,522-,523- 14
152C,263G,309.1C,315.1C 20
263G,315.1C,522-,523- 21
152C,263G,309.1C,309.2C,315.1C 27
263G,315.1C,477C 28
73G,263G,309.1C,315.1C 31
152C,263G,315.1C 32
73G,263G,315.1C 36
263G,309.1C,309.2C,315.1C 62
263G,309.1C,315.1C 138
263G,315.1C 165

218 out of 318, 68.55%, of the haplotypes are singletons.

Terminology

Maternal Inheritance:

Unlike the majority of our DNA, mtDNA is a separate entity. Once independent, it contains its own DNA and is passed on to us solely from our mothers.

SNPs:

A Single Nucleotide Polymorphism or SNP is a change to a single point in the mtDNA's code.

Subclades:

As papers have tested FGSs for H its subclades have been revised and expanded. Below are some of the published trees for H.

Finnila 2001

  • H
    • H1
    • H2

Herrnstadt 2002

  • H
    • H1
    • H2
    • H3

Loogvali 2004

  • H
    • H1
      • H1a
      • H1b
      • H1f
    • H2
      • H2a
        • H2a
      • H2b
    • H3
    • H4
      • H4a
    • H5
      • H5a
        • H5a1
    • H6
      • H6a
        • H6a1
      • H6b
    • H7
    • H8
    • H9
    • H10
    • H11
      • H11a

Achilli 2004

  • H
    • H1
      • H1a
      • H1b
    • H2
    • H3
      • H3a
    • H4
    • H5
      • H5a
    • H6
      • H6a
      • H6b
    • H7
    • H8
    • H9
    • H10
    • H11
    • H12
    • H13
      • H13a
    • H14
    • H15

Brandstatter 2006

  • H
    • H1
      • H1a
        • H1a1
      • H1b
      • H1c
        • H1c1
        • H1c2
      • H1f
      • H1-8602
      • H1-8473
    • H2
      • H2a
      • H2b
    • H3
      • H3a
      • H3b
      • H3c
    • H4
      • H4a
        • H4a1
    • H5
      • H5a
        • H5a1
    • H6
      • H6a
        • H6a1
    • H7
    • H8
    • H9
    • H10
    • H11
    • H12
    • H13
      • H13a
        • H13a1
    • H14
    • H15
    • H16
    • H17
    • H-709

Roostalu 2007

  • H
    • H1
      • H1a
        • H1a1
        • H1a2
      • H1b
      • H1c
        • H1c1
        • H1c2
      • H1d
      • H1f
    • H2
      • H2a
        • H2a1
        • H2a2
      • H2b
    • H3
      • H3a
      • H3b
      • H3c
    • H4
      • H4a
        • H4a1
          • H4a1a
      • H4b
    • H5
      • H5a
        • H5a1
    • H6
      • H6a
        • H6a1
      • H6b
    • H7
    • H8
    • H9
    • H10
    • H11
      • H11a
    • H12
    • H13
      • H13a
        • H13a1
        • H13a2
    • H14
      • H14a
    • H15
    • H16
    • H17
    • H18
    • H19
    • H20
    • H21

Math:

There are two calculations that are done for each data set. They are calculated with several variables. The number of people in the sample is called n. The number of unique haplotypes is called m. The number of people with any one haplotype is called x.

The Random Matching Probability, RMP, measures the probability of picking two matching haplotypes out of a population and having them be unrelated. A lower RMP means that a chance match is less likely. Then if two people are found to have been neighbors and the RMP is sufficiently low a family relationship can be inferred. To find the RMP each x is first squared, the sum of these squares is multiplied by one over n squared.

Here is an example:

Haplotype x x^2
Hap1 5 25
Hap2 3 9
Hap3 1 1
Hap4 7 49
Sum of x^2—> 84

n is 5+3+1+7 or 16. 16 squared is 256. So 1/256 is multiplied by 84. This gives us .328125. Multiplying by 100 changes the answer to a percentage, 32.8125%.

Diversity is a simple measure of how many different haplotypes there are in a sample in proportion to the size of the sample. Here it is a higher diversity that indicates a lower probability of a chance match. It is found by dividing m by n. Looking at the above sample, m is 4 because there are 4 unique haplotypes. 4 is then divided by n, 16, for .25. Multiplying by 100 changes the answer to a percentage, 25%.

Haplotype Analysis:

In any sample of H haplotypes there will be some that are identical to each other and some that only occur once. Five HVR1 haplotypes picked at random from a population might be:

16519C
16519C
16051G,16162G,16259T,16519C
16051G,16162G,16259T,16519C
16126C,16519C

To better organize these results they can be sorted into unique haplotypes with frequencies.

16051G,16162G,16259T,16519C 2
16126C,16519C 1
16519C 2

This makes the math that was mentioned above much easier to perform.

Match Probability Analysis

HVR1:

There are 337 unique haplotypes in a sample of 2348. This is a ratio of 337 to 2348 or a diversity of 14.35%. The Random Match probability is 10.64%. The combination of a low diversity and a higher random match probability indicates that HVR1 by itself is a poor method to distinguish H lineages. It should also be noted that at n =796 the HVR1 diversity was 19.47% while the random match probability was 12.01%.

HVR1 (1600+) x x^2
037G 1 1
038G,092C,214T,519C 1 1
042A,243C,519C 1 1
051G,129A,162G,465T,519C 1 1
051G,162G,185T,519C,527T 1 1
051G,162G,259T,519C 2 4
051G,162G,266T,519C 6 36
051G,162G,343G,519C 2 4
051G,162G,465T,519C 11 121
051G,162G,519C 15 225
051G,311C,356C,519C 1 1
051G,519C 1 1
066G,519C 2 4
067T,172C,240G,261T 1 1
067T,183C,189C,519C 14 196
067T,311C 1 1
067T,355T,519C 1 1
080G,189C,223T,356C,519C 1 1
080G,189C,356C 1 1
092C,129A,239T,519C 1 1
092C,140C,311C 4 16
092C,140C,311C,526A 1 1
092C,183C,189C,519C 1 1
092C,293G,311C 1 1
092C,298C,311C 1 1
092C,519C 3 9
093C 4 16
093C,124C,221T,519C 1 1
093C,129A,278T,316G,519C 1 1
093C,129A,316G,519C 2 4
093C,129A,519C 4 16
093C,168T,519C 1 1
093C,183C,189C,278T,519C 1 1
093C,189C,356C,362C,519C 1 1
093C,189C,368C,519C 1 1
093C,221T,316G,519C 1 1
093C,221T,519C 13 169
093C,265G,519C 2 4
093C,291T,519C 1 1
093C,300G,519C 1 1
093C,304C 1 1
093C,311C,519C 5 25
093C,362C,482G 2 4
093C,519C 30 900
093C,519C,527T 1 1
111A,519C 7 49
111G,519C 1 1
111T,129A,256T,311C,519C 1 1
111T,129A,256T,519C 9 81
111T,167T,288C,362C,519C 1 1
111T,293G,311C 2 4
111T,295T,519C 1 1
111T,519C 1 1
114T,126C,519C 2 4
114T,189C,356C,519C 1 1
114T,344T,519C 4 16
114T,519C 16 256
124C,354T 1 1
126C 1 1
126C,223T,260T,298C 2 4
126C,261T,519C 1 1
126C,298C,346C 1 1
126C,519C 2 4
129A 13 169
129A,147T,316G,519C 1 1
129A,162G,209C,519C 1 1
129A,162G,519C 1 1
129A,184T 1 1
129A,189C,355T,356C,362C,519C 4 16
129A,189C,519C 1 1
129A,239T,519C 1 1
129A,249C,362C,482G 2 4
129A,249C,519C 1 1
129A,293G,316G,335G,519C 1 1
129A,298C 2 4
129A,300G,519C 1 1
129A,304C 3 9
129A,316G,519C 27 729
129A,354T 1 1
129A,357C,519C 1 1
129A,519C 42 1764
134T,292T,362C,482G 1 1
134T,362C,482G 2 4
136C,295T,519C 1 1
136C,519C 2 4
140C,189C,293G,311C 1 1
140C,265G,293G,311C 2 4
140C,287T,519C 1 1
140C,293G,311C 4 16
145A 1 1
145A,274A,343G,519C 1 1
145A,519C 5 25
146G,519C 1 1
147T,519C 1 1
148T,261T,519C 1 1
148T,519C 14 196
150T,519C 1 1
153A 1 1
153A,288C,362C 2 4
153A,519C 1 1
154C,362C,482G 1 1
162G,174T,209C,519C 1 1
162G,189C,294.1A,519C 1 1
162G,209C,295T,519C 1 1
162G,209C,519C 35 1225
162G,290G,519C 1 1
162G,362C,519C 1 1
162G,519C 31 961
167T,519C 1 1
168T,519C 7 49
170G,256T,295T,519C 1 1
170G,256T,309G,519C 1 1
170G,256T,519C 1 1
172C 1 1
172C,183C,189C,356C,362C,519C 2 4
172C,209C,519C 1 1
172C,217C 1 1
172C,304C 1 1
172C,304C,311C 17 289
172C,311C 1 1
172C,362C,519C 4 16
172C,519C 12 144
172C,519C,527T 1 1
174T,311C,519C 1 1
176T 1 1
176T,354T 1 1
177G,519C 3 9
179T 1 1
179T,183C,189C,519C 1 1
180G,311C 1 1
182C,183C,189C,356C,519C 1 1
182C,183C,189C,362C,519C 2 4
183C,189C,192A,519C 1 1
183C,189C,239T,519C 1 1
183C,189C,256T,352C 1 1
183C,189C,261T,519C 1 1
183C,189C,274A,519C 1 1
183C,189C,356C,362C,519C 5 25
183C,189C,356C,519C 14 196
183C,189C,356C,519C,527T 2 4
183C,189C,362C,519C 1 1
183C,189C,519C 7 49
183G,390A,519C 1 1
184A,320T,368C,519C 1 1
184T 1 1
184T,189C,519C 1 1
184T,304C 1 1
184T,362C,400T,482G 1 1
184T,519C 3 9
185T,519C 1 1
188T 1 1
188T,304C 1 1
188T,311C,519C 1 1
188T,519C 2 4
189C 2 4
189C,260T,519C 1 1
189C,278T,519C 1 1
189C,290T,291T,356C,362C,519C 1 1
189C,290T,519C 2 4
189C,291T,304C 1 1
189C,298C,357C 1 1
189C,298C,519C 1 1
189C,299G,422C,519C 2 4
189C,300G,362C,482G 1 1
189C,304C 1 1
189C,304C,519C 1 1
189C,311C 1 1
189C,316G,519C 1 1
189C,356C 1 1
189C,356C,362C,519C 33 1089
189C,356C,519C 17 289
189C,362C,519C 1 1
189C,519C 63 3969
192T,304C 2 4
192T,304C,335G 1 1
192T,362C,445C,482G 1 1
192T,519C 1 1
193T,219G,362C,482G 2 4
193T,239T,519C 1 1
193T,519C 6 36
195C 2 4
195C,291T,519C 1 1
209C 1 1
209C,304C,519C 1 1
209C,519C 10 100
212G 1 1
213A,216G,304C 1 1
215G,266T,519C 1 1
215G,354T 2 4
217C,218T,242T,519C 1 1
218T,519C 2 4
220G,519C 2 4
221T,290T,294T,519C 1 1
221T,519C 13 169
222T,299G,519C 1 1
223T,362C,482G 1 1
223T,519C 1 1
224C,288C,362C,519C 1 1
224C,398A,519C 1 1
234T,293G,519C 1 1
234T,519C 3 9
235G,239T,291T,293G,311C,400T 1 1
235G,290T,291T 1 1
235G,291T 12 144
235G,291T,293G 1 1
235G,291T,293G,400T 3 9
235G,293G,400T 1 1
239A,519C 1 1
239G,256T,311C,519C 1 1
239G,290T,519C 1 1
239G,519C 9 81
239T,286T,519C 1 1
239T,519C 17 289
240G,309G,519C 1 1
240G,519C 1 1
241G,287T,519C 1 1
242T,362C 1 1
243C,293G,311C 1 1
243C,304C 1 1
243C,519C 1 1
245T,519C 1 1
248T,298C 1 1
248T,318T,519C 1 1
248T,519C 5 25
249C,362C,482G 9 81
254G,311C,519C 1 1
254G,356C,519C 1 1
256T 1 1
256T,272G,352C 1 1
256T,293G,311C,525G 1 1
256T,352C 1 1
256T,354T 3 9
256T,519C 9 81
258G,319A,320T,519C 1 1
259T,311C,519C 1 1
259T,519C 3 9
260T 2 4
260T,519C 3 9
261T 1 1
261T,298C 1 1
261T,304C,519C 1 1
261T,311C 2 4
261T,519C 25 625
262T,278T,519C 1 1
263C,519C 37 1369
265G,311C 1 1
265G,519C 1 1
266T 1 1
267T,519C 1 1
269G 1 1
269G,298C 1 1
270T 1 1
270T,519C 1 1
274A,294G,519C 1 1
274A,519C 2 4
278T,293G,311C 8 64
278T,304C,311C 1 1
278T,311C,519C 1 1
278T,519C 5 25
283G,304C 1 1
284G,294T,304C 1 1
284G,519C 3 9
286T,311C 2 4
286T,519C 1 1
287T 3 9
288C,362C 11 121
289G,519C 2 4
291T 1 1
291T,293G 1 1
291T,304C 1 1
291T,390A,519C 1 1
291T,519C 9 81
293C,519C 2 4
293G,311C 27 729
293G,311C,368C 3 9
293G,519C 5 25
294T,304C 1 1
294T,362C,482G 1 1
298C 10 100
298C,311C 2 4
298C,324C 1 1
298C,354T,390A,519C 1 1
299G,311C 1 1
299G,519C 12 144
300G,344T,519C 1 1
300G,362C 1 1
302G,304C 1 1
302G,468C,519C 3 9
302G,519C 1 1
304C 114 12996
304C,311C 1 1
304C,311C,362C 2 4
304C,311C,391A 1 1
304C,343G 1 1
304C,357C 2 4
304C,362C 1 1
304C,390A 1 1
304C,519C 12 144
311C 25 625
311C,354T,519C 1 1
311C,355T,519C 1 1
311C,357C,519C 2 4
311C,360T,519C 1 1
311C,390A 1 1
311C,497G,519C 1 1
311C,519C 56 3136
311G,519C 1 1
312G,519C 2 4
318G,519C 1 1
318T,519C 1 1
319A,519C 7 49
325C,362C 1 1
325C,519C 6 36
327A 1 1
327T,519C 4 16
342C,519C 2 4
354T 30 900
354T,519C 4 16
355T,519C 4 16
356C 1 1
357C,519C 2 4
362C,482G 81 6561
362C,482G,519C 1 1
362C,519C 15 225
366T 2 4
368C,519C 1 1
390A,519C 3 9
399G 1 1
399G,519C 5 25
465T,519C 1 1
468C,519C 2 4
519C 711 505521
519C,524C 1 1
519C,527T 4 16
526A 1 1
CRS 195 38025

HVR2:

There are 318 unique haplotypes in a sample of 1155. This is a ratio of 318 to 1155 or 27.53%. The random match probability is 4.38%. Although this is an improvement when compared to the HVR1 results, it is still not a genealogically useful determinant. At n=368 the HVR2 diversity was 40.22% while the random match probability was 4.71%.

HVR2 x x^2
10C,263G,315.1C 1 1
114T,146C,152C,195C,263G,315.1C 1 1
131C,152C,207A,263G,309.1C,315.1C 1 1
131C,152C,263G,309.1C,315.1C 1 1
131C,195C,263G,309.1C,315.1C 1 1
131C,263G,315.1C 1 1
131C,263G,456T 1 1
146C,152C,195C,263G,309.1C,315.1C 1 1
146C,152C,195C,263G,315.1C 1 1
146C,152C,207A,263G,315.1C,522-,523- 2 4
146C,152C,239C,263G,309.1C,315.1C 1 1
146C,152C,263G,309.1C,309.2C,315.1C 1 1
146C,152C,263G,309.1C,315.1C 2 4
146C,152C,263G,315.1C 1 1
146C,153G,263G,309.1C,315.1C,524.1C,524.2A 1 1
146C,195C,263G,309.1C,309.2C,315.1C,456T 1 1
146C,195C,263G,309.1C,309.2C,315.1C,522-,523- 1 1
146C,195C,263G,309.1C,315.1C 2 4
146C,195C,263G,309.1C,315.1C,456T 3 9
146C,195C,263G,315.1C 5 25
146C,195C,263G,315.1C,471C 2 4
146C,195C,263G,315.1C,522-,523- 1 1
146C,217C,263G,315.1C 1 1
146C,239C,263G,309.1C,309.2C,315.1C 1 1
146C,239C,263G,309.1C,309.2C,315.1C,553T 1 1
146C,263G,309.1C,309.2C,315.1C 4 16
146C,263G,309.1C,309.2C,315.1C,453C 1 1
146C,263G,309.1C,309.2C,315.1C,456T 1 1
146C,263G,309.1C,309.2C,315.1C,456T,573.1C,573.2C 1 1
146C,263G,309.1C,309.2C,315.1C,524.1C,524.2A 2 4
146C,263G,309.1C,309.2C,315.1C,524.1C,524.2A,573.1C 1 1
146C,263G,309.1C,315.1C 12 144
146C,263G,309.1C,315.1C,456T 2 4
146C,263G,309.1C,315.1C,493G 1 1
146C,263G,315.1C 5 25
146C,263G,315.1C,456T,573.1C,573.2C 1 1
150T,152C,263G,315.1C 1 1
150T,195C,263G,309.1C,309.2C,315.1C 1 1
150T,195C,263G,309.1C,309.2C,315.1C,522-,523- 1 1
150T,263G,309.1C,309.2C,315.1C 3 9
150T,263G,309.1C,309.2C,315.1C,456T,522-,523- 1 1
150T,263G,309.1C,315.1C 4 16
150T,263G,309.1C,315.1C,456T 1 1
150T,263G,310C 1 1
150T,263G,315.1C 2 4
150T,263G,315.1C,456T 1 1
151T,152C,263G,309.1C,315.1C 1 1
151T,152C,263G,315.1C 3 9
151T,195C,263G,309.1C,309.2C,315.1C 2 4
151T,263G,291.1A,315.1C 1 1
151T,263G,309.1C,309.2C,315.1C 1 1
151T,263G,309.1C,315.1C,477C 1 1
151T,263G,315.1C 1 1
152C,153G,204C,263G,309.1C,309.2C,315.1C 1 1
152C,183G,263G,309.1C,315.1C 1 1
152C,194T,263G,315.1C 1 1
152C,194T,263G,315.1C,522-,523- 1 1
152C,195C,198T,263G,309.1C,309.2C,315.1C 1 1
152C,195C,263G,309.1C,309.2C,315.1C 2 4
152C,195C,263G,309.1C,315.1C 2 4
152C,195C,263G,309.1C,315.1C,513A 1 1
152C,195C,263G,309.1C,315.1C,522-,523- 1 1
152C,195C,263G,315.1C 3 9
152C,199C,263G,315.1C,524.1A,524.2C 1 1
152C,199C,263G,315.1C,524.1C,524.2A 1 1
152C,200G,263G,309.1C,309.2C,315.1C 1 1
152C,200G,263G,309.1C,309.2C,315.1C,444G,456T,522-,523- 2 4
152C,200G,263G,309.1C,315.1C 1 1
152C,200G,263G,315.1C 1 1
152C,200G,263G,315.1C,444G,456T,522-,523- 1 1
152C,228A,263G,309.1C,315.1C 1 1
152C,239C,263G,309.1C,309.2C,315.1C 2 4
152C,239C,263G,309.1C,315.1C 2 4
152C,239C,263G,315.1C 1 1
152C,263G,293C,309.1C,309.2C,315.1C 2 4
152C,263G,293C,309.1C,315.1C 1 1
152C,263G,309.1C,309.2C,315.1C 27 729
152C,263G,309.1C,309.2C,315.1C,456T,513A 1 1
152C,263G,309.1C,309.2C,315.1C,456T,522-,523- 1 1
152C,263G,309.1C,309.2C,315.1C,477C 1 1
152C,263G,309.1C,309.2C,315.1C,524.1C,524.2A 2 4
152C,263G,309.1C,315.1C 20 400
152C,263G,309.1C,315.1C,316A 1 1
152C,263G,309.1C,315.1C,456T,513A 1 1
152C,263G,309.1C,315.1C,456T,522-,523- 2 4
152C,263G,309.1C,315.1C,477C 1 1
152C,263G,309.1C,315.1C,522-,523- 3 9
152C,263G,309.1C,315.1C,524.1C,524.2A 1 1
152C,263G,309.1C,315.1C,537T 2 4
152C,263G,309.1C,315.1C,573.1C,573.2C 1 1
152C,263G,315.1C 32 1024
152C,263G,315.1C,340T,456T 1 1
152C,263G,315.1C,444G,456T,522-,523- 4 16
152C,263G,315.1C,455.1T 1 1
152C,263G,315.1C,456T 1 1
152C,263G,315.1C,456T,522-,523- 4 16
152C,263G,315.1C,477C 3 9
152C,263G,315.1C,522-,523- 3 9
152C,263G,315.1C,524.1C,524.2A 8 64
152C,309.1C,309.2C,315.1C 3 9
153G,199C,204C,263G,309.1C,309.2C,315.1C 1 1
153G,263G,309.1C,309.2C,315.1C 2 4
153G,263G,309.1C,315.1C 1 1
16T,146C,239C,263G,309.1C,315.1C 1 1
182T,263G,315.1C 1 1
183G,263G,309.1C,309.2C,315.1C 2 4
183G,263G,309.1C,315.1C 1 1
183G,315.1C 1 1
185A,195C,263G,309.1C,309.2C,315.1C 1 1
185A,263G,309.1C,315.1C,513A 1 1
186A,263G,309.1C,315.1C 2 4
186A,263G,315.1C 3 9
186T,263G,315.1C,456T,522-,523- 1 1
189G,263G,309.1C,309.2C,315.1C 1 1
189G,263G,309.1C,315.1C 1 1
189G,263G,315.1C 1 1
189G,309.1C,315.1C 1 1
194T,205A,263G,309.1C,309.2C,315.1C,522-,523-,573.1C 1 1
194T,263G,315.1C 1 1
195C,228A,263G,309.1C,309.2C,315.1C 1 1
195C,239C,263G,309.1C,309.2C,315.1C 2 4
195C,239C,263G,315.1C 1 1
195C,257G,263G,309.1C,309.2C,315.1C,477C 3 9
195C,257G,263G,309.1C,315.1C 1 1
195C,257G,263G,309.1C,315.1C,477C 5 25
195C,263G,292C,315.1C 1 1
195C,263G,309.1C,309.2C,315.1C 4 16
195C,263G,309.1C,315.1C 13 169
195C,263G,309.1C,315.1C,513A 1 1
195C,263G,309.1C,315.1C,524.1C,524.2A 1 1
195C,263G,315.1C 8 64
195C,263G,315.1C,335G 3 9
195C,263G,315.1C,477C 1 1
195C,263G,315.1C,477C,513A 1 1
195C,263G,315.1C,513A,522-,523- 1 1
195C,263G,315.1C,522-,523- 7 49
195C,263G,315.1C,522-,523-,573.1C,573.2C 1 1
195C,263G,315.1C,524.1C,524.2A 1 1
196C,263G,309.1C,309.2C,315.1C 1 1
199C,236C,263G,309.1C,309.2C,315.1C 1 1
199C,263G,309.1C,309.2C,315.1C 1 1
199C,263G,309.1C,315.1C 1 1
199C,263G,309.1C,315.1C,456T,513A 1 1
199C,263G,315.1C 3 9
200G,227G,263G,309.1C,315.1C 1 1
200G,263G,309.1C,309.2C,315.1C 1 1
200G,263G,309.1C,309.2C,315.1C,524.1C,524.2A 1 1
200G,263G,309.1C,315.1C 3 9
200G,263G,315.1C 1 1
200G,263G,315.1C,522-,523- 1 1
204C,239C,263G,309.1C,309.2C,315.1C,524.1C,524.2A 1 1
204C,239C,263G,309.1C,315.1C 1 1
204C,263G,309.1C,309.2C,315.1C 1 1
204C,263G,315.1C 1 1
204C,315.1C 1 1
207A,239C,263G,309.1C,315.1C 1 1
210G,263G,309.1C,309.2C,315.1C 2 4
214G,263G,315.1C,522-,523- 1 1
224C,263G,309.1C,309.2C,315.1C,499A 1 1
234G,263G,309.1C,315.1C,477C 1 1
234G,263G,315.1C 1 1
235G,263G,315.1C 1 1
236C,263G,309.1C,315.1C 1 1
239C,263G,288G,309.1C,315.1C 1 1
239C,263G,309.1C,309.2C,315.1C 13 169
239C,263G,309.1C,309.2C,315.1C,524.1C,524.2A 2 4
239C,263G,309.1C,309.2C,315.1C,573.1C,573.2C 1 1
239C,263G,309.1C,315.1C 13 169
239C,263G,309.1C,315.1C,466C 1 1
239C,263G,315.1C 8 64
242T,263G,309.1C,315.1C,408A 1 1
246G,263G,309.1C,315.1C 1 1
249-,263G,309.1C,315.1C 1 1
251A,263G,315.1C 1 1
256T,263G,315.1C 2 4
257G,263G,309.1C,309.2C,315.1C,477C 3 9
257G,263G,315.1C,477C 4 16
262T,263G,309.1C,315.1C 1 1
263G,264T,315.1C 1 1
263G,267C,309.1C,309.2C,315.1C,485C 1 1
263G,291.1A,309.1C,315.1C 1 1
263G,291.1A,315.1C 1 1
263G,292.1A,315.1C 1 1
263G,293C,309.1C,309.2C,315.1C 1 1
263G,293C,315.1C 3 9
263G,309.1C,309.2C 1 1
263G,309.1C,309.2C,315.1C 62 3844
263G,309.1C,309.2C,315.1C,327T,456T 3 9
263G,309.1C,309.2C,315.1C,385G 1 1
263G,309.1C,309.2C,315.1C,408A 1 1
263G,309.1C,309.2C,315.1C,417A 1 1
263G,309.1C,309.2C,315.1C,456T 6 36
263G,309.1C,309.2C,315.1C,456T,522-,523- 2 4
263G,309.1C,309.2C,315.1C,456T,524.1C,524.2A 1 1
263G,309.1C,309.2C,315.1C,477C 4 16
263G,309.1C,309.2C,315.1C,477C,522-,523- 1 1
263G,309.1C,309.2C,315.1C,522-,523- 8 64
263G,309.1C,309.2C,315.1C,522-,523-,533G 1 1
263G,309.1C,309.2C,315.1C,524.1C,524.1A 1 1
263G,309.1C,309.2C,315.1C,524.1C,524.2A 6 36
263G,309.1C,309.2C,456T,522-,523- 1 1
263G,309.1C,315.1C 138 19044
263G,309.1C,315.1C,316A 1 1
263G,309.1C,315.1C,337-,456T,522-,523- 1 1
263G,309.1C,315.1C,391C 1 1
263G,309.1C,315.1C,408A 3 9
263G,309.1C,315.1C,456T 6 36
263G,309.1C,315.1C,456T,522-,523- 4 16
263G,309.1C,315.1C,477C 8 64
263G,309.1C,315.1C,477C,513A 1 1
263G,309.1C,315.1C,477C,524.1C,524.2A 2 4
263G,309.1C,315.1C,499A,524.1C,524.2A 1 1
263G,309.1C,315.1C,502T 1 1
263G,309.1C,315.1C,512C 1 1
263G,309.1C,315.1C,513A 4 16
263G,309.1C,315.1C,522-,523- 8 64
263G,309.1C,315.1C,573.1C,573.2C 1 1
263G,315.1C 165 27225
263G,315.1C,315.2C 1 1
263G,315.1C,380A 1 1
263G,315.1C,408A 3 9
263G,315.1C,444G,456T,522-,523- 7 49
263G,315.1C,456T 7 49
263G,315.1C,456T,522-,523- 14 196
263G,315.1C,456T,524.1A,524.2C,524.3A,524.4C 1 1
263G,315.1C,456T,524.1C,524.2A,524.3C,524.4A 1 1
263G,315.1C,459- 1 1
263G,315.1C,466C 1 1
263G,315.1C,477C 28 784
263G,315.1C,477C,522-,523- 1 1
263G,315.1C,503G 1 1
263G,315.1C,520T,573.1C 1 1
263G,315.1C,521G 2 4
263G,315.1C,522-,523- 21 441
263G,315.1C,524.1C,524.2A 4 16
263G,315.1C,524.1C,524.2A,524.3C,524.4A 1 1
309.1C,309.2C,315.1C 4 16
309.1C,309.2C,315.1C,327T,456T 1 1
309.1C,315.1C 3 9
315.1C 6 36
41T,263G,309.1C,315.1C,477C 1 1
42.1G,195C,263G,309.1C,309.2C,315.1C 1 1
44.1C,152C,214G,239C,263G,309.1C,309.2C,315.1C,533G 1 1
44.1C,239C,263G,309.1C,309.2C,315.1C 1 1
44.1C,263G,309.1C,309.2C,315.1C 1 1
44.1C,55C,57C,146C,263G,309.1C,315.1C 1 1
46C,263G,315.1C,477C 1 1
55C,56.1C,263G,309.1C,315.1C 1 1
55C,57C,263G,309.1C,309.2C,315.1C 1 1
55C,57C,61T,263G,309.1C,315.1C 1 1
55C,57G,263G,309.1C,309.2C,315.1C 1 1
55C,57G,263G,309.1C,315.1C 1 1
56.1C,58C,73G,195C,263G,309.1C,315.1C 1 1
60.1T,71A,153G,204C,207A,263G,309.1C,309.2C,309.3C,315.1C,373G 1 1
63C,64T,66A,239C,263G,315.1C 1 1
64T,195C,263G,309.1C,309.2C,315.1C,522-,523- 1 1
64T,263G,315.1C 1 1
64T,65C,152C,263G,315.1C 1 1
72C,152C,195C,263G,315.1C 1 1
72C,152C,263G,315.1C 1 1
72C,195C,198T,263G,309.1C,315.1C 1 1
72C,195C,263G,309.1C,315.1C 2 4
72C,195C,263G,315.1C 1 1
72C,195C,263G,315.1C,524.1C,524.2A 1 1
72C,200G,263G,315.1C 1 1
72C,200G,263G,315.1C,522-,523- 1 1
72C,263G,309.1C,315.1C 2 4
72C,263G,315.1C 1 1
72C,93G,195C,263G,309.1C,315.1C 1 1
72G,146C,195C,263G,309.1C,309.2C,315.1C 1 1
72G,146C,195C,263G,309.1C,315.1C 2 4
72G,263G,309.1C,315.1C 2 4
73G,143A,146C,263G,309.1C,315.1C 1 1
73G,143A,146C,263G,309.1C,315.1C,385G 1 1
73G,143A,146C,263G,315.1C 1 1
73G,146C,152C,263G,315.1C,498- 1 1
73G,146C,263G,309.1C,315.1C,522-,523- 1 1
73G,146C,263G,315.1C,522-,523- 2 4
73G,150T,263G,309.1C,309.2C,315.1C 1 1
73G,151T,263G,315.1C 1 1
73G,152C,263G,309.1C,315.1C 1 1
73G,152C,263G,309.1C,315.1C,522-,523- 1 1
73G,152C,263G,315.1C 1 1
73G,189G,263G,295A,309.1C,315.1C,522-,523- 1 1
73G,195C,263G,309.1C,315.1C 1 1
73G,195C,263G,315.1C,522-,523- 1 1
73G,204C,263G,309.1C,315.1C,522-,523- 2 4
73G,228A,263G,315.1C 1 1
73G,239C,263G,309.1C,315.1C 1 1
73G,263G,281G,315.1C,408A 1 1
73G,263G,309.1C,309.2C,315.1C 1 1
73G,263G,309.1C,315.1C 31 961
73G,263G,309.1C,315.1C,522-,523- 8 64
73G,263G,309.1C,315.1C,545A 1 1
73G,263G,315.1C 36 1296
73G,263G,315.1C,456T,522-,523- 1 1
73G,263G,315.1C,522-,523- 10 100
73G,263G,315.1C,524.1C,524.2A 1 1
73G,263G,315.1C,573.1C,573.2C 2 4
73G,93G,195C,263G,315.1C 1 1
73G,93G,263G,315.1C 1 1
93G,152C,263G,315.1C 1 1
93G,186A,263G,309.1C,315.1C 1 1
93G,200G,263G,315.1C 1 1
93G,263G,309.1C,309.2C,315.1C 2 4
93G,263G,309.1C,315.1C 1 1
93G,263G,309.1C,315.1C,456T,470G,522-,523- 1 1
93G,263G,309.1C,315.1C,522-,523- 1 1
93G,263G,315.1C 12 144
93G,263G,315.1C,513A 1 1
93G,263G,315.1C,522-,523- 1 1
93G,315.1C 1 1
93G,315.1C,524.1C,524.2A 1 1
93G,95C,263G,309.1C,315.1C 1 1
93G,95C,263G,315.1C,522-,523- 1 1
95C,152C,263G,309.1C,315.1C,396T 1 1
95C,195C,263G,309.1C,315.1C 1 1
CRS 3 9

HVR1 and HVR2:

The combination of HVR1 & HVR2 increases diversity. There are 640 combination haplotypes in a sample of 1155. This is a ratio of 640 to 1155 or 55.41% The random match probability is .72%. This is just over the level of diversity we are looking for.  At n=368 the combined HVR1 and HVR2 diversity was 70.11% and the random match probability was 1.02%.

HVR1 (16000+) HVR2 x x^2
037G 152C,263G,309.1C,315.1C 1 1
038G,092C,214T,519C 263G,315.1C 1 1
042A,243C,519C 73G,263G,309.1C,315.1C 1 1
051G,162G,185T,519C,527T 73G,263G,309.1C,315.1C 1 1
051G,162G,266T,519C 73G,263G,315.1C 3 9
051G,162G,266T,519C 73G,93G,263G,315.1C 1 1
051G,162G,343G,519C 73G,263G,315.1C 1 1
051G,162G,465T,519C 73G,195C,263G,315.1C,522-,523- 1 1
051G,162G,465T,519C 73G,263G,309.1C,315.1C,522-,523- 1 1
051G,162G,465T,519C 73G,263G,315.1C,522-,523- 4 16
051G,162G,519C 56.1C,58C,73G,195C,263G,309.1C,315.1C 1 1
051G,162G,519C 73G,263G,309.1C,315.1C 1 1
051G,162G,519C 73G,263G,315.1C 2 4
051G,162G,519C 73G,263G,315.1C,522-,523- 2 4
051G,162G,519C 73G,93G,195C,263G,315.1C 1 1
051G,311C,356C,519C 131C,195C,263G,309.1C,315.1C 1 1
051G,519C 246G,263G,309.1C,315.1C 1 1
067T,183C,189C,519C 152C,263G,309.1C,309.2C,315.1C 11 121
080G,189C,223T,356C,519C 151T,263G,309.1C,309.2C,315.1C 1 1
080G,189C,356C 73G,263G,315.1C 1 1
092C,129A,239T,519C 73G,263G,315.1C 1 1
092C,140C,311C 195C,263G,309.1C,315.1C 2 4
092C,140C,311C 195C,263G,315.1C 1 1
092C,293G,311C 146C,195C,263G,315.1C 1 1
092C,519C 73G,152C,263G,309.1C,315.1C 1 1
093C 263G,309.1C,315.1C 1 1
093C 263G,315.1C 1 1
093C,129A,278T,316G,519C 263G,315.1C 1 1
093C,129A,316G,519C 263G,315.1C 1 1
093C,129A,519C 263G,309.1C,315.1C 1 1
093C,129A,519C 263G,315.1C 1 1
093C,183C,189C,278T,519C 44.1C,263G,309.1C,309.2C,315.1C 1 1
093C,189C,356C,362C,519C 263G,315.1C,522-,523- 1 1
093C,189C,368C,519C 263G,315.1C 1 1
093C,221T,316G,519C 263G,309.1C,315.1C 1 1
093C,221T,519C 152C,263G,309.1C,309.2C,315.1C 1 1
093C,221T,519C 152C,263G,309.1C,315.1C 1 1
093C,221T,519C 263G,309.1C,309.2C,315.1C 1 1
093C,221T,519C 263G,309.1C,315.1C 8 64
093C,221T,519C 263G,315.1C 1 1
093C,265G,519C 263G,315.1C 1 1
093C,291T,519C 152C,263G,315.1C 1 1
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293G,311C 195C,263G,315.1C 2 4
293G,311C 263G,309.1C,315.1C 1 1
293G,311C,368C 195C,263G,309.1C,315.1C 2 4
293G,519C 236C,263G,309.1C,315.1C 1 1
293G,519C 263G,309.1C,315.1C 1 1
293G,519C 263G,309.1C,315.1C,522-,523- 1 1
294T,304C 263G,315.1C,456T,524.1C,524.2A,524.3C,524.4A 1 1
294T,362C,482G 239C,263G,309.1C,315.1C,466C 1 1
298C 72C,195C,263G,309.1C,315.1C 2 4
298C 72C,195C,263G,315.1C 1 1
298C 72C,195C,263G,315.1C,524.1C,524.2A 1 1
298C 72C,200G,263G,315.1C 1 1
298C 72C,263G,309.1C,315.1C 2 4
298C,311C 195C,263G,309.1C,309.2C,315.1C 1 1
298C,324C 72C,152C,195C,263G,315.1C 1 1
299G,519C 150T,263G,309.1C,315.1C 1 1
299G,519C 263G,309.1C,309.2C,315.1C 2 4
299G,519C 263G,309.1C,315.1C 2 4
300G,344T,519C 152C,263G,315.1C 1 1
302G,304C 146C,263G,309.1C,309.2C,315.1C,456T 1 1
302G,468C,519C 152C,183G,263G,309.1C,315.1C 1 1
302G,468C,519C 183G,263G,309.1C,309.2C,315.1C 1 1
302G,468C,519C 183G,263G,309.1C,315.1C 1 1
302G,519C 263G,309.1C,315.1C 1 1
304C 131C,263G,456T 1 1
304C 146C,195C,263G,309.1C,309.2C,315.1C,456T 1 1
304C 146C,195C,263G,309.1C,315.1C,456T 3 9
304C 146C,263G,309.1C,315.1C,456T 1 1
304C 150T,263G,309.1C,309.2C,315.1C,456T,522-,523- 1 1
304C 150T,263G,315.1C,456T 1 1
304C 152C,263G,309.1C,309.2C,315.1C,456T,522-,523- 1 1
304C 152C,263G,309.1C,315.1C,456T,513A 1 1
304C 152C,263G,315.1C,340T,456T 1 1
304C 152C,263G,315.1C,456T 1 1
304C 152C,263G,315.1C,456T,522-,523- 3 9
304C 186T,263G,315.1C,456T,522-,523- 1 1
304C 199C,263G,309.1C,315.1C,456T,513A 1 1
304C 263G,309.1C,309.2C,315.1C,327T,456T 3 9
304C 263G,309.1C,309.2C,315.1C,456T 3 9
304C 263G,309.1C,309.2C,315.1C,456T,522-,523- 2 4
304C 263G,309.1C,309.2C,315.1C,456T,524.1C,524.2A 1 1
304C 263G,309.1C,309.2C,456T,522-,523- 1 1
304C 263G,309.1C,315.1C,456T 2 4
304C 263G,315.1C,456T 3 9
304C 263G,315.1C,456T,522-,523- 12 144
304C 309.1C,309.2C,315.1C,327T,456T 1 1
304C 73G,263G,315.1C,456T,522-,523- 1 1
304C 93G,263G,309.1C,315.1C,456T,470G,522-,523- 1 1
304C,311C 150T,263G,309.1C,315.1C,456T 1 1
304C,311C,362C 263G,309.1C,315.1C,456T 1 1
304C,311C,391A 263G,309.1C,315.1C,456T 1 1
304C,343G 263G,309.1C,309.2C,315.1C,456T 1 1
304C,357C 263G,315.1C,456T,522-,523- 1 1
304C,362C 263G,315.1C,456T 1 1
304C,390A 152C,263G,309.1C,309.2C,315.1C,456T,513A 1 1
304C,519C 152C,263G,309.1C,315.1C,456T,522-,523- 2 4
304C,519C 152C,263G,315.1C,456T,522-,523- 1 1
304C,519C 195C,263G,315.1C,335G 1 1
304C,519C 263G,309.1C,309.2C,315.1C,456T 1 1
304C,519C 263G,309.1C,315.1C,456T,522-,523- 3 9
304C,519C 263G,315.1C,456T 1 1
311C 131C,152C,207A,263G,309.1C,315.1C 1 1
311C 146C,263G,309.1C,315.1C 1 1
311C 194T,205A,263G,309.1C,309.2C,315.1C,522-,523-,573.1C 1 1
311C 200G,227G,263G,309.1C,315.1C 1 1
311C 263G,309.1C,315.1C 3 9
311C 263G,315.1C 1 1
311C 315.1C 1 1
311C,354T,519C 195C,263G,309.1C,309.2C,315.1C 1 1
311C,357C,519C 146C,195C,263G,315.1C 1 1
311C,360T,519C 257G,263G,315.1C,477C 1 1
311C,390A 131C,152C,263G,309.1C,315.1C 1 1
311C,519C 10C,263G,315.1C 1 1
311C,519C 146C,217C,263G,315.1C 1 1
311C,519C 150T,263G,315.1C 1 1
311C,519C 152C,263G,315.1C 2 4
311C,519C 257G,263G,315.1C,477C 3 9
311C,519C 263G,309.1C,309.2C,315.1C 1 1
311C,519C 263G,309.1C,315.1C 2 4
311C,519C 263G,315.1C 6 36
311C,519C 263G,315.1C,524.1C,524.2A 1 1
311C,519C 73G,189G,263G,295A,309.1C,315.1C,522-,523- 1 1
311C,519C 73G,263G,315.1C 1 1
311C,519C 93G,263G,309.1C,309.2C,315.1C 1 1
311C,519C 93G,263G,315.1C 5 25
312G,519C 263G,309.1C,315.1C 2 4
318G,519C 263G,309.1C,315.1C 1 1
318T,519C 309.1C,315.1C 1 1
319A,519C 72G,146C,195C,263G,309.1C,309.2C,315.1C 1 1
319A,519C 72G,146C,195C,263G,309.1C,315.1C 2 4
325C,362C 239C,263G,309.1C,309.2C,315.1C 1 1
325C,519C 195C,263G,315.1C,477C 1 1
325C,519C 224C,263G,309.1C,309.2C,315.1C,499A 1 1
325C,519C 263G,309.1C,309.2C,315.1C 1 1
325C,519C 263G,309.1C,315.1C 1 1
325C,519C 263G,315.1C,520T,573.1C 1 1
327T,519C 152C,263G,315.1C 1 1
327T,519C 263G,315.1C 1 1
342C,519C 263G,309.1C,315.1C 1 1
342C,519C 263G,309.1C,315.1C,502T 1 1
354T 146C,263G,309.1C,309.2C,315.1C 1 1
354T 146C,263G,309.1C,315.1C 1 1
354T 152C,263G,309.1C,315.1C 1 1
354T 152C,263G,315.1C 1 1
354T 210G,263G,309.1C,309.2C,315.1C 2 4
354T 263G,309.1C,309.2C,315.1C 1 1
354T 263G,309.1C,315.1C 3 9
354T 263G,315.1C 3 9
354T 73G,263G,309.1C,315.1C 1 1
354T,519C 263G,309.1C,315.1C 3 9
355T,519C 263G,315.1C,477C 2 4
356C 150T,263G,315.1C 1 1
357C,519C 263G,315.1C 1 1
362C,482G 146C,152C,239C,263G,309.1C,315.1C 1 1
362C,482G 146C,239C,263G,309.1C,309.2C,315.1C 1 1
362C,482G 146C,239C,263G,309.1C,309.2C,315.1C,553T 1 1
362C,482G 152C,239C,263G,309.1C,309.2C,315.1C 1 1
362C,482G 152C,239C,263G,309.1C,315.1C 1 1
362C,482G 16T,146C,239C,263G,309.1C,315.1C 1 1
362C,482G 195C,239C,263G,309.1C,309.2C,315.1C 2 4
362C,482G 195C,239C,263G,315.1C 1 1
362C,482G 239C,263G,288G,309.1C,315.1C 1 1
362C,482G 239C,263G,309.1C,309.2C,315.1C 11 121
362C,482G 239C,263G,309.1C,309.2C,315.1C,524.1C,524.2A 2 4
362C,482G 239C,263G,309.1C,309.2C,315.1C,573.1C,573.2C 1 1
362C,482G 239C,263G,309.1C,315.1C 10 100
362C,482G 239C,263G,315.1C 4 16
362C,482G 44.1C,239C,263G,309.1C,309.2C,315.1C 1 1
362C,482G 73G,239C,263G,309.1C,315.1C 1 1
362C,482G,519C 152C,239C,263G,309.1C,309.2C,315.1C 1 1
362C,519C 146C,195C,263G,315.1C 1 1
362C,519C 152C,263G,315.1C 1 1
362C,519C 152C,263G,315.1C,524.1C,524.2A 1 1
362C,519C 239C,263G,309.1C,315.1C 1 1
362C,519C 263G,309.1C,309.2C,315.1C 2 4
366T 55C,56.1C,263G,309.1C,315.1C 1 1
366T 55C,57C,61T,263G,309.1C,315.1C 1 1
368C,519C 309.1C,315.1C 1 1
390A,519C 263G,309.1C,309.2C,315.1C 1 1
390A,519C 263G,309.1C,315.1C 1 1
390A,519C 73G,150T,263G,309.1C,309.2C,315.1C 1 1
399G,519C 152C,263G,315.1C,524.1C,524.2A 1 1
468C,519C 146C,263G,309.1C,309.2C,315.1C,524.1C,524.2A 1 1
519C 131C,263G,315.1C 1 1
519C 146C,152C,207A,263G,315.1C,522-,523- 2 4
519C 146C,152C,263G,309.1C,315.1C 1 1
519C 146C,152C,263G,315.1C 1 1
519C 146C,153G,263G,309.1C,315.1C,524.1C,524.2A 1 1
519C 146C,195C,263G,315.1C 1 1
519C 146C,195C,263G,315.1C,471C 2 4
519C 146C,195C,263G,315.1C,522-,523- 1 1
519C 146C,263G,309.1C,309.2C,315.1C 1 1
519C 146C,263G,309.1C,309.2C,315.1C,524.1C,524.2A 1 1
519C 146C,263G,309.1C,309.2C,315.1C,524.1C,524.2A,573.1C 1 1
519C 146C,263G,309.1C,315.1C 3 9
519C 146C,263G,309.1C,315.1C,493G 1 1
519C 146C,263G,315.1C 3 9
519C 150T,152C,263G,315.1C 1 1
519C 150T,195C,263G,309.1C,309.2C,315.1C 1 1
519C 150T,195C,263G,309.1C,309.2C,315.1C,522-,523- 1 1
519C 150T,263G,309.1C,309.2C,315.1C 1 1
519C 150T,263G,309.1C,315.1C 3 9
519C 151T,152C,263G,315.1C 2 4
519C 151T,263G,291.1A,315.1C 1 1
519C 152C,194T,263G,315.1C 1 1
519C 152C,194T,263G,315.1C,522-,523- 1 1
519C 152C,195C,263G,309.1C,309.2C,315.1C 1 1
519C 152C,199C,263G,315.1C,524.1A,524.2C 1 1
519C 152C,199C,263G,315.1C,524.1C,524.2A 1 1
519C 152C,200G,263G,315.1C 1 1
519C 152C,263G,293C,309.1C,309.2C,315.1C 2 4
519C 152C,263G,293C,309.1C,315.1C 1 1
519C 152C,263G,309.1C,309.2C,315.1C 5 25
519C 152C,263G,309.1C,309.2C,315.1C,477C 1 1
519C 152C,263G,309.1C,309.2C,315.1C,524.1C,524.2A 2 4
519C 152C,263G,309.1C,315.1C 3 9
519C 152C,263G,309.1C,315.1C,316A 1 1
519C 152C,263G,309.1C,315.1C,477C 1 1
519C 152C,263G,309.1C,315.1C,522-,523- 1 1
519C 152C,263G,315.1C 16 256
519C 152C,263G,315.1C,455.1T 1 1
519C 152C,263G,315.1C,477C 3 9
519C 152C,263G,315.1C,522-,523- 1 1
519C 152C,263G,315.1C,524.1C,524.2A 5 25
519C 183G,263G,309.1C,309.2C,315.1C 1 1
519C 183G,315.1C 1 1
519C 186A,263G,309.1C,315.1C 2 4
519C 186A,263G,315.1C 3 9
519C 189G,263G,309.1C,309.2C,315.1C 1 1
519C 189G,263G,309.1C,315.1C 1 1
519C 194T,263G,315.1C 1 1
519C 195C,257G,263G,309.1C,309.2C,315.1C,477C 3 9
519C 195C,257G,263G,309.1C,315.1C,477C 3 9
519C 195C,263G,292C,315.1C 1 1
519C 196C,263G,309.1C,309.2C,315.1C 1 1
519C 199C,263G,309.1C,315.1C 1 1
519C 199C,263G,315.1C 1 1
519C 200G,263G,309.1C,315.1C 1 1
519C 204C,263G,315.1C 1 1
519C 235G,263G,315.1C 1 1
519C 249-,263G,309.1C,315.1C 1 1
519C 251A,263G,315.1C 1 1
519C 263G,264T,315.1C 1 1
519C 263G,267C,309.1C,309.2C,315.1C,485C 1 1
519C 263G,291.1A,309.1C,315.1C 1 1
519C 263G,291.1A,315.1C 1 1
519C 263G,292.1A,315.1C 1 1
519C 263G,293C,309.1C,309.2C,315.1C 1 1
519C 263G,293C,315.1C 1 1
519C 263G,309.1C,309.2C 1 1
519C 263G,309.1C,309.2C,315.1C 14 196
519C 263G,309.1C,309.2C,315.1C,408A 1 1
519C 263G,309.1C,309.2C,315.1C,477C 3 9
519C 263G,309.1C,309.2C,315.1C,477C,522-,523- 1 1
519C 263G,309.1C,309.2C,315.1C,522-,523- 2 4
519C 263G,309.1C,309.2C,315.1C,524.1C,524.1A 1 1
519C 263G,309.1C,309.2C,315.1C,524.1C,524.2A 3 9
519C 263G,309.1C,315.1C 55 3025
519C 263G,309.1C,315.1C,477C 5 25
519C 263G,309.1C,315.1C,477C,524.1C,524.2A 2 4
519C 263G,309.1C,315.1C,499A,524.1C,524.2A 1 1
519C 263G,309.1C,315.1C,522-,523- 3 9
519C 263G,315.1C 50 2500
519C 263G,315.1C,408A 1 1
519C 263G,315.1C,477C 13 169
519C 263G,315.1C,522-,523- 2 4
519C 263G,315.1C,524.1C,524.2A 1 1
519C 41T,263G,309.1C,315.1C,477C 1 1
519C 46C,263G,315.1C,477C 1 1
519C 72C,152C,263G,315.1C 1 1
519C 73G,263G,309.1C,315.1C 4 16
519C 73G,263G,315.1C 3 9
519C 73G,263G,315.1C,573.1C,573.2C 2 4
519C 93G,152C,263G,315.1C 1 1
519C 93G,200G,263G,315.1C 1 1
519C 93G,263G,309.1C,309.2C,315.1C 1 1
519C 93G,263G,309.1C,315.1C 1 1
519C 93G,263G,315.1C 6 36
519C 93G,263G,315.1C,513A 1 1
519C 93G,95C,263G,315.1C,522-,523- 1 1
519C 95C,195C,263G,309.1C,315.1C 1 1
519C,527T 182T,263G,315.1C 1 1
519C,527T 263G,315.1C 1 1
526A 195C,263G,315.1C,522-,523- 1 1
CRS 146C,152C,263G,309.1C,315.1C 1 1
CRS 146C,263G,309.1C,315.1C 1 1
CRS 150T,263G,310C 1 1
CRS 151T,152C,263G,309.1C,315.1C 1 1
CRS 152C,263G,309.1C,309.2C,315.1C 1 1
CRS 152C,263G,309.1C,315.1C,573.1C,573.2C 1 1
CRS 152C,263G,315.1C 1 1
CRS 152C,309.1C,309.2C,315.1C 1 1
CRS 195C,263G,315.1C,513A,522-,523- 1 1
CRS 195C,263G,315.1C,522-,523- 4 16
CRS 200G,263G,309.1C,309.2C,315.1C,524.1C,524.2A 1 1
CRS 204C,263G,309.1C,309.2C,315.1C 1 1
CRS 204C,315.1C 1 1
CRS 234G,263G,315.1C 1 1
CRS 262T,263G,309.1C,315.1C 1 1
CRS 263G,309.1C,309.2C,315.1C 5 25
CRS 263G,309.1C,309.2C,315.1C,522-,523- 1 1
CRS 263G,309.1C,309.2C,315.1C,522-,523-,533G 1 1
CRS 263G,309.1C,315.1C 10 100
CRS 263G,309.1C,315.1C,477C 3 9
CRS 263G,309.1C,315.1C,522-,523- 2 4
CRS 263G,309.1C,315.1C,573.1C,573.2C 1 1
CRS 263G,315.1C 12 144
CRS 263G,315.1C,522-,523- 4 16
CRS 309.1C,309.2C,315.1C 3 9
CRS 309.1C,315.1C 1 1
CRS 315.1C 4 16
CRS 55C,57C,263G,309.1C,309.2C,315.1C 1 1
CRS 55C,57G,263G,309.1C,315.1C 1 1
CRS 72C,263G,315.1C 1 1
CRS 73G,143A,146C,263G,309.1C,315.1C 1 1
CRS 73G,143A,146C,263G,309.1C,315.1C,385G 1 1
CRS 73G,146C,263G,309.1C,315.1C,522-,523- 1 1
CRS 73G,204C,263G,309.1C,315.1C,522-,523- 2 4
CRS 73G,263G,309.1C,315.1C 2 4
CRS 73G,263G,309.1C,315.1C,522-,523- 7 49
CRS 73G,263G,315.1C,522-,523- 3 9
CRS 93G,315.1C 1 1
CRS 93G,315.1C,524.1C,524.2A 1 1
CRS CRS 2 4

mt-H Subclade, HVR1, and HVR2:

462 members have results back from both HVR regions and the mt-H subclade test. There are 336 haplotypes giving a ratio of 336 to 462. This is 72.72% diversity and a .79% random match probability. At n=207 diversity was 82.61% and the random match probability was .86%.

Hg HVR1 (16000+) HVR2 x x^2
H13 037G 152C,263G,309.1C,315.1C 1 1
H3 038G,092C,214T,519C 263G,315.1C 1 1
H1a 051G,162G,266T,519C 73G,263G,315.1C 2 4
H1a 051G,162G,343G,519C 73G,263G,315.1C 1 1
H1a 051G,162G,465T,519C 73G,263G,315.1C,522-,523- 3 9
H1a 051G,162G,519C 73G,263G,315.1C 1 1
H1a 051G,162G,519C 73G,93G,195C,263G,315.1C 1 1
H11 051G,311C,356C,519C 131C,195C,263G,309.1C,315.1C 1 1
H1b 080G,189C,223T,356C,519C 151T,263G,309.1C,309.2C,315.1C 1 1
H1b 080G,189C,356C 73G,263G,315.1C 1 1
H6a 092C,129A,239T,519C 73G,263G,315.1C 1 1
H11 092C,140C,311C 195C,263G,309.1C,315.1C 1 1
H* 093C,129A,278T,316G,519C 263G,315.1C 1 1
H* 093C,129A,519C 263G,315.1C 1 1
H6a 093C,129A,519C 263G,309.1C,315.1C 1 1
H1b 093C,189C,356C,362C,519C 263G,315.1C,522-,523- 1 1
H10 093C,221T,519C 263G,309.1C,315.1C 2 4
H7 093C,265G,519C 263G,315.1C 1 1
H* 093C,311C,519C 263G,315.1C,466C 1 1
H* 093C,519C 152C,263G,309.1C,315.1C 1 1
H* 093C,519C 195C,263G,309.1C,315.1C,513A 1 1
H* 093C,519C 200G,263G,315.1C 1 1
H* 093C,519C 263G,309.1C,315.1C,522-,523- 1 1
H3 093C,519C 263G,309.1C,315.1C,408A 2 4
H3 093C,519C 263G,315.1C,408A 1 1
H3 093C,519C,527T 73G,263G,281G,315.1C,408A 1 1
H1 111A,519C 199C,236C,263G,309.1C,309.2C,315.1C 1 1
H1 111A,519C 263G,309.1C,309.2C,315.1C 1 1
H1 111A,519C 73G,263G,309.1C,309.2C,315.1C 1 1
H1 111A,519C 93G,95C,263G,309.1C,315.1C 1 1
H1 111G,519C 263G,309.1C,315.1C 1 1
H3 111T,129A,256T,519C 153G,263G,309.1C,309.2C,315.1C 1 1
H3 111T,129A,256T,519C 153G,263G,309.1C,315.1C 1 1
H* 111T,295T,519C 152C,263G,315.1C,522-,523- 1 1
H10 114T,344T,519C 263G,309.1C,315.1C,513A 3 9
H1 114T,519C 263G,315.1C 2 4
H10 114T,519C 263G,309.1C,309.2C,315.1C,524.1C,524.2A 1 1
H10 114T,519C 263G,309.1C,315.1C 1 1
H7 126C,519C 263G,315.1C 1 1
H13 129A 263G,309.1C,309.2C,315.1C 1 1
H2b 129A 152C,263G,309.1C,315.1C 1 1
H1a 129A,162G,519C 73G,263G,309.1C,315.1C 1 1
H6a 129A,239T,519C 73G,263G,315.1C 1 1
H* 129A,316G,519C 263G,309.1C,315.1C 1 1
H* 129A,316G,519C 263G,315.1C 1 1
H* 129A,316G,519C 263G,315.1C,521G 1 1
H* 129A,519C 146C,263G,315.1C 1 1
H1 129A,519C 263G,315.1C 1 1
H3 129A,519C 195C,263G,315.1C 1 1
H3 129A,519C 263G,309.1C,309.2C,315.1C 2 4
H3 129A,519C 263G,315.1C,524.1C,524.2A 1 1
H6c 134T,292T,362C,482G 239C,263G,309.1C,309.2C,315.1C 1 1
H6c 134T,362C,482G 239C,263G,309.1C,315.1C 1 1
H* 136C,295T,519C 263G,315.1C 1 1
H11 140C,265G,293G,311C 152C,195C,263G,315.1C 1 1
H11 140C,293G,311C 195C,263G,315.1C 2 4
H13 145A 152C,263G,309.1C,315.1C 1 1
H3 145A,519C 152C,263G,309.1C,309.2C,315.1C 1 1
H7 148T,261T,519C 199C,263G,309.1C,309.2C,315.1C 1 1
H1 148T,519C 263G,309.1C,315.1C 1 1
H1 148T,519C 263G,315.1C 3 9
H3 148T,519C 151T,263G,315.1C 1 1
H3 148T,519C 195C,263G,315.1C 1 1
H3 150T,519C 263G,315.1C 1 1
H13 153A 263G,309.1C,315.1C 1 1
H6a 154C,362C,482G 152C,239C,263G,309.1C,315.1C 1 1
H1a 162G,209C,519C 73G,263G,309.1C,315.1C 2 4
H1a 162G,209C,519C 73G,263G,315.1C 6 36
H1a 162G,519C 73G,152C,263G,315.1C 1 1
H1a 162G,519C 73G,263G,309.1C,315.1C 5 25
H2 162G,519C 73G,263G,309.1C,315.1C 1 1
H* 167T,519C 263G,315.1C 1 1
H3 170G,256T,519C 152C,195C,263G,309.1C,315.1C,513A 1 1
H5a 172C,304C,311C 152C,200G,263G,315.1C,444G,456T,522-,523- 1 1
H5a 172C,304C,311C 263G,315.1C,444G,456T,522-,523- 3 9
H3 172C,362C,519C 73G,263G,315.1C 1 1
H3 172C,519C 72G,263G,309.1C,315.1C 1 1
H* 172C,519C,527T 263G,315.1C 1 1
H3 174T,311C,519C 263G,309.1C,315.1C 1 1
H2a 176T,354T 263G,309.1C,315.1C 1 1
H1 179T,183C,189C,519C 263G,315.1C,459- 1 1
H1b 182C,183C,189C,356C,519C 64T,195C,263G,309.1C,309.2C,315.1C,522-,523- 1 1
H1 182C,183C,189C,362C,519C 257G,263G,309.1C,309.2C,315.1C,477C 1 1
H1 183C,189C,192A,519C 152C,263G,309.1C,315.1C 1 1
H1 183C,189C,239T,519C 152C,263G,315.1C 1 1
H7 183C,189C,261T,519C 263G,309.1C,309.2C,315.1C 1 1
H2 183C,189C,274A,519C 263G,315.1C,503G 1 1
H1b 183C,189C,356C,362C,519C 214G,263G,315.1C,522-,523- 1 1
H1b 183C,189C,356C,519C 263G,315.1C 1 1
H1 183C,189C,519C 152C,263G,309.1C,315.1C 1 1
H1 183C,189C,519C 263G,315.1C 2 4
H5a 184T,304C 263G,315.1C,456T,522-,523- 1 1
H* 185T,519C 152C,263G,315.1C,522-,523- 1 1
H* 188T,519C 152C,263G,315.1C 1 1
H1 189C 263G,315.1C 1 1
H4 189C 195C,263G,315.1C,522-,523-,573.1C,573.2C 1 1
H1b 189C,290T,291T,356C,362C,519C 64T,263G,315.1C 1 1
H1 189C,290T,519C 263G,315.1C 1 1
H5a 189C,291T,304C 263G,309.1C,315.1C,456T,522-,523- 1 1
H3 189C,304C,519C 263G,315.1C 1 1
H1b 189C,356C,362C,519C 263G,309.1C,309.2C,315.1C,522-,523- 3 9
H1b 189C,356C,362C,519C 263G,309.1C,315.1C,522-,523- 1 1
H1b 189C,356C,362C,519C 263G,315.1C,522-,523- 5 25
H1b 189C,356C,362C,519C 93G,263G,315.1C,522-,523- 1 1
H1 189C,356C,519C 263G,309.1C,309.2C,315.1C 1 1
H1b 189C,356C,519C 152C,263G,309.1C,309.2C,315.1C 2 4
H1b 189C,356C,519C 263G,315.1C 2 4
H1b 189C,356C,519C 64T,65C,152C,263G,315.1C 1 1
H* 189C,519C 153G,199C,204C,263G,309.1C,309.2C,315.1C 1 1
H* 189C,519C 263G,315.1C 3 9
H* 189C,519C 60.1T,71A,153G,204C,207A,263G,309.1C,309.2C,309.3C,315.1C,373G 1 1
H1 189C,519C 146C,263G,309.1C,315.1C 1 1
H1 189C,519C 263G,309.1C,315.1C 1 1
H3 189C,519C 152C,263G,309.1C,315.1C 1 1
H3 189C,519C 263G,309.1C,309.2C,315.1C 1 1
H5 192T,304C 263G,315.1C,456T 1 1
H5 192T,304C,335G 263G,315.1C,456T 1 1
H* 192T,519C 263G,315.1C 1 1
H7 193T,519C 152C,263G,315.1C 1 1
H2 195C 315.1C 1 1
H3 209C,519C 263G,293C,315.1C 1 1
H13 212G 73G,143A,146C,263G,315.1C 1 1
H10 215G,266T,519C 263G,315.1C 1 1
H2a 215G,354T 263G,315.1C 1 1
H2a1 215G,354T 263G,315.1C 1 1
H* 220G,519C 195C,263G,315.1C,522-,523- 1 1
H10 221T,519C 150T,263G,309.1C,309.2C,315.1C 1 1
H10 221T,519C 263G,309.1C,309.2C,315.1C 1 1
H10 221T,519C 263G,309.1C,315.1C 2 4
H10 224C,398A,519C 263G,309.1C,315.1C 1 1
H* 234T,293G,519C 263G,315.1C,315.2C 1 1
H2b 235G,291T 263G,309.1C,309.2C,315.1C 1 1
H2b 235G,291T 263G,309.1C,315.1C,391C 1 1
H3 239G,290T,519C 152C,263G,309.1C,315.1C 1 1
H3 239G,519C 152C,263G,309.1C,315.1C 1 1
H1 239T,519C 150T,263G,309.1C,309.2C,315.1C 1 1
H1 239T,519C 263G,309.1C,315.1C,513A 1 1
H1 239T,519C 263G,315.1C 1 1
H3 248T,519C 263G,309.1C,309.2C,315.1C 1 1
H3 248T,519C 263G,309.1C,315.1C 1 1
H6a 249C,362C,482G 239C,263G,315.1C 1 1
H* 256T 153G,263G,309.1C,309.2C,315.1C 1 1
H7 256T,272G,352C 152C,200G,263G,309.1C,309.2C,315.1C 1 1
H1 256T,519C 152C,263G,309.1C,315.1C,524.1C,524.2A 1 1
H3 256T,519C 263G,315.1C 1 1
H3 258G,319A,320T,519C 195C,257G,263G,309.1C,315.1C 1 1
H1 259T,311C,519C 263G,309.1C,309.2C,315.1C 1 1
H4 260T 263G,315.1C,522-,523- 1 1
H* 260T,519C 195C,263G,309.1C,315.1C 1 1
H* 261T,519C 195C,263G,315.1C,335G 1 1
H7 261T,519C 152C,263G,309.1C,309.2C,315.1C 1 1
H7 261T,519C 263G,309.1C,309.2C,315.1C 1 1
H7 261T,519C 73G,146C,152C,263G,315.1C,498- 1 1
H1 263C,519C 263G,309.1C,315.1C,477C,513A 1 1
H1 263C,519C 263G,315.1C,477C 4 16
H7 265G,519C 263G,309.1C,315.1C 1 1
H1 267T,519C 263G,315.1C 1 1
H2 274A,519C 146C,263G,309.1C,315.1C 1 1
H5 283G,304C 263G,309.1C,315.1C,456T 1 1
H5 284G,294T,304C 263G,315.1C,456T,524.1A,524.2C,524.3A,524.4C 1 1
H* 284G,519C 152C,263G,315.1C 1 1
H15 286T,311C 55C,57G,263G,309.1C,309.2C,315.1C 1 1
H4 287T 73G,146C,263G,315.1C,522-,523- 1 1
H8 288C,362C 146C,195C,263G,309.1C,309.2C,315.1C,522-,523- 1 1
H8 288C,362C 146C,263G,309.1C,315.1C 1 1
H8 288C,362C 146C,263G,315.1C 1 1
H3 289G,519C 263G,309.1C,309.2C,315.1C 1 1
H5 291T,304C 146C,263G,315.1C,456T,573.1C,573.2C 1 1
H* 293G,311C 185A,195C,263G,309.1C,309.2C,315.1C 1 1
H11 293G,311C 152C,195C,263G,309.1C,315.1C 2 4
H11 293G,311C 152C,195C,263G,315.1C 1 1
H11 293G,311C 195C,263G,309.1C,315.1C 2 4
H11 293G,311C 195C,263G,309.1C,315.1C,524.1C,524.2A 1 1
H11 293G,311C 263G,309.1C,315.1C 1 1
H11 293G,311C,368C 195C,263G,309.1C,315.1C 1 1
H5 294T,304C 263G,315.1C,456T,524.1C,524.2A,524.3C,524.4A 1 1
H6a 294T,362C,482G 239C,263G,309.1C,315.1C,466C 1 1
H* 299G,519C 263G,309.1C,315.1C 1 1
H5 304C 146C,195C,263G,309.1C,309.2C,315.1C,456T 1 1
H5 304C 146C,195C,263G,309.1C,315.1C,456T 3 9
H5 304C 150T,263G,309.1C,309.2C,315.1C,456T,522-,523- 1 1
H5 304C 150T,263G,315.1C,456T 1 1
H5 304C 263G,309.1C,309.2C,315.1C,327T,456T 2 4
H5 304C 263G,309.1C,309.2C,315.1C,456T 2 4
H5 304C 263G,309.1C,309.2C,315.1C,456T,524.1C,524.2A 1 1
H5a 304C 152C,263G,315.1C,456T 1 1
H5a 304C 152C,263G,315.1C,456T,522-,523- 1 1
H5a 304C 263G,309.1C,315.1C,456T 1 1
H5a 304C 263G,315.1C,456T,522-,523- 7 49
H5a 304C 93G,263G,309.1C,315.1C,456T,470G,522-,523- 1 1
H5a1 304C 152C,263G,309.1C,309.2C,315.1C,456T,522-,523- 1 1
H5a1 304C 152C,263G,315.1C,456T,522-,523- 1 1
H5a1 304C 263G,309.1C,309.2C,315.1C,456T,522-,523- 1 1
H9 304C 263G,315.1C,456T 2 4
H5 304C,311C 150T,263G,309.1C,315.1C,456T 1 1
H5a 304C,343G 263G,309.1C,309.2C,315.1C,456T 1 1
H5a 304C,357C 263G,315.1C,456T,522-,523- 1 1
H5 304C,362C 263G,315.1C,456T 1 1
H5a 304C,390A 152C,263G,309.1C,309.2C,315.1C,456T,513A 1 1
H* 304C,519C 195C,263G,315.1C,335G 1 1
H5 304C,519C 263G,315.1C,456T 1 1
H11 311C,354T,519C 195C,263G,309.1C,309.2C,315.1C 1 1
H11 311C,357C,519C 146C,195C,263G,315.1C 1 1
H1 311C,360T,519C 257G,263G,315.1C,477C 1 1
H* 311C,519C 93G,263G,315.1C 1 1
H1 311C,519C 257G,263G,315.1C,477C 1 1
H1 311C,519C 263G,309.1C,315.1C 1 1
H1 311C,519C 73G,189G,263G,295A,309.1C,315.1C,522-,523- 1 1
H1 311C,519C 73G,263G,315.1C 1 1
H3 311C,519C 146C,217C,263G,315.1C 1 1
H3 311C,519C 152C,263G,315.1C 1 1
H3 311C,519C 263G,315.1C 1 1
H3 311C,519C 93G,263G,309.1C,309.2C,315.1C 1 1
H7 311C,519C 263G,315.1C,524.1C,524.2A 1 1
H1 312G,519C 263G,309.1C,315.1C 1 1
H* 318G,519C 263G,309.1C,315.1C 1 1
H2b 318T,519C 309.1C,315.1C 1 1
H* 325C,519C 224C,263G,309.1C,309.2C,315.1C,499A 1 1
H* 325C,519C 263G,309.1C,315.1C 1 1
H* 327T,519C 263G,315.1C 1 1
H1 342C,519C 263G,309.1C,315.1C 1 1
H7 342C,519C 263G,309.1C,315.1C,502T 1 1
H2a 354T 146C,263G,309.1C,309.2C,315.1C 1 1
H2a 354T 152C,263G,309.1C,315.1C 1 1
H2a 354T 210G,263G,309.1C,309.2C,315.1C 1 1
H2a 354T 263G,309.1C,309.2C,315.1C 1 1
H2a 354T 263G,315.1C 2 4
H2a1 354T 146C,263G,309.1C,315.1C 1 1
H2a 354T,519C 263G,309.1C,315.1C 1 1
H1 355T,519C 263G,315.1C,477C 2 4
H6a 362C,482G 146C,152C,239C,263G,309.1C,315.1C 1 1
H6a 362C,482G 146C,239C,263G,309.1C,309.2C,315.1C 1 1
H6a 362C,482G 152C,239C,263G,309.1C,309.2C,315.1C 1 1
H6a 362C,482G 195C,239C,263G,309.1C,309.2C,315.1C 2 4
H6a 362C,482G 195C,239C,263G,315.1C 1 1
H6a 362C,482G 239C,263G,309.1C,309.2C,315.1C 6 36
H6a 362C,482G 239C,263G,309.1C,309.2C,315.1C,524.1C,524.2A 2 4
H6a 362C,482G 239C,263G,309.1C,315.1C 3 9
H6c 362C,482G 239C,263G,309.1C,309.2C,315.1C 1 1
H6c 362C,482G 239C,263G,315.1C 1 1
H* 362C,519C 146C,195C,263G,315.1C 1 1
H* 362C,519C 263G,309.1C,309.2C,315.1C 2 4
H1 362C,519C 152C,263G,315.1C 1 1
H1 362C,519C 152C,263G,315.1C,524.1C,524.2A 1 1
H2 362C,519C 263G,309.1C,309.2C,315.1C 1 1
H15 366T 55C,57C,61T,263G,309.1C,315.1C 1 1
H* 390A,519C 263G,309.1C,309.2C,315.1C 1 1
H* 390A,519C 263G,309.1C,315.1C 1 1
H1 390A,519C 73G,150T,263G,309.1C,309.2C,315.1C 1 1
H* 519C 131C,263G,315.1C 1 1
H* 519C 146C,152C,207A,263G,315.1C,522-,523- 1 1
H* 519C 146C,195C,263G,315.1C,522-,523- 1 1
H* 519C 146C,263G,309.1C,315.1C 2 4
H* 519C 152C,263G,309.1C,315.1C,316A 1 1
H* 519C 152C,263G,309.1C,315.1C,522-,523- 1 1
H* 519C 186A,263G,315.1C 1 1
H* 519C 196C,263G,309.1C,309.2C,315.1C 1 1
H* 519C 263G,309.1C,309.2C,315.1C,477C,522-,523- 1 1
H* 519C 263G,309.1C,315.1C 27 729
H* 519C 263G,315.1C 16 256
H* 519C 263G,315.1C,524.1C,524.2A 1 1
H* 519C 73G,263G,315.1C,573.1C,573.2C 1 1
H* 519C 93G,200G,263G,315.1C 1 1
H* 519C 93G,263G,315.1C 5 25
H1 519C 146C,263G,309.1C,309.2C,315.1C 1 1
H1 519C 146C,263G,309.1C,315.1C 1 1
H1 519C 146C,263G,309.1C,315.1C,493G 1 1
H1 519C 146C,263G,315.1C 1 1
H1 519C 150T,263G,309.1C,315.1C 1 1
H1 519C 152C,263G,315.1C 3 9
H1 519C 152C,263G,315.1C,477C 1 1
H1 519C 152C,263G,315.1C,524.1C,524.2A 3 9
H1 519C 183G,263G,309.1C,309.2C,315.1C 1 1
H1 519C 195C,257G,263G,309.1C,309.2C,315.1C,477C 1 1
H1 519C 195C,257G,263G,309.1C,315.1C,477C 2 4
H1 519C 199C,263G,309.1C,315.1C 1 1
H1 519C 263G,309.1C,309.2C,315.1C,522-,523- 1 1
H1 519C 263G,309.1C,315.1C 9 81
H1 519C 263G,309.1C,315.1C,477C 4 16
H1 519C 263G,309.1C,315.1C,477C,524.1C,524.2A 2 4
H1 519C 263G,309.1C,315.1C,522-,523- 1 1
H1 519C 263G,315.1C 1 1
H1 519C 263G,315.1C,477C 8 64
H1 519C 41T,263G,309.1C,315.1C,477C 1 1
H1 519C 73G,263G,315.1C 2 4
H1 519C 93G,152C,263G,315.1C 1 1
H1 519C 93G,263G,315.1C 3 9
H10 519C 263G,309.1C,309.2C,315.1C,524.1C,524.2A 1 1
H10 519C 263G,309.1C,315.1C 1 1
H13 519C 263G,309.1C,315.1C 1 1
H2 519C 263G,309.1C,315.1C 1 1
H3 519C 146C,263G,315.1C 1 1
H3 519C 151T,152C,263G,315.1C 1 1
H3 519C 152C,194T,263G,315.1C,522-,523- 1 1
H3 519C 152C,263G,293C,309.1C,309.2C,315.1C 1 1
H3 519C 152C,263G,309.1C,309.2C,315.1C 1 1
H3 519C 152C,263G,309.1C,309.2C,315.1C,524.1C,524.2A 1 1
H3 519C 152C,263G,309.1C,315.1C 1 1
H3 519C 152C,263G,315.1C 4 16
H3 519C 152C,263G,315.1C,524.1C,524.2A 1 1
H3 519C 263G,309.1C,309.2C,315.1C 2 4
H3 519C 263G,309.1C,309.2C,315.1C,408A 1 1
H3 519C 263G,309.1C,315.1C 3 9
H3 519C 263G,309.1C,315.1C,522-,523- 1 1
H3 519C 263G,315.1C 5 25
H3 519C 263G,315.1C,522-,523- 1 1
H7 519C 152C,263G,315.1C 1 1
H7 519C 263G,292.1A,315.1C 1 1
H7 519C 263G,309.1C,309.2C,315.1C 2 4
H7 519C 263G,309.1C,315.1C 3 9
H7 519C 263G,315.1C 3 9
H11 526A 195C,263G,315.1C,522-,523- 1 1
H* CRS 152C,263G,309.1C,309.2C,315.1C 1 1
H* CRS 262T,263G,309.1C,315.1C 1 1
H* CRS 263G,315.1C 5 25
H1 CRS 263G,309.1C,309.2C,315.1C 1 1
H13 CRS 146C,152C,263G,309.1C,315.1C 1 1
H13 CRS 263G,309.1C,315.1C 3 9
H13 CRS 73G,143A,146C,263G,309.1C,315.1C 1 1
H15 CRS 55C,57C,263G,309.1C,309.2C,315.1C 1 1
H15 CRS 55C,57G,263G,309.1C,315.1C 1 1
H2a CRS 93G,315.1C 1 1
H2b CRS 204C,315.1C 1 1
H2b CRS 309.1C,315.1C 1 1
H2b CRS 315.1C 1 1
H2b CRS 93G,315.1C,524.1C,524.2A 1 1
H4 CRS 195C,263G,315.1C,522-,523- 1 1
H4 CRS 263G,309.1C,309.2C,315.1C,522-,523- 1 1
H4 CRS 263G,309.1C,315.1C,522-,523- 1 1
H4 CRS 263G,315.1C 4 16
H4 CRS 263G,315.1C,522-,523- 1 1
H4 CRS 73G,146C,263G,309.1C,315.1C,522-,523- 1 1
H4 CRS 73G,204C,263G,309.1C,315.1C,522-,523- 1 1
H4 CRS 73G,263G,309.1C,315.1C,522-,523- 2 4
H4 CRS 73G,263G,315.1C,522-,523- 1 1
H7 CRS 263G,309.1C,309.2C,315.1C 1 1

Roostalu Hg, HVR1, HVR2:

Below the 245 FGS samples are evaluated according to their Roostalu Haplogroup designation and their HVR results. There are 245 haplotypes giving a ratio of 202 to 245. This is 82.86% diversity and a .67% random match probability.

Hg HVR1 (16000+) HVR2 x x^2
H10 042A,243C,519C 73G,263G,309.1C,315.1C 1 1
H1a 051G,162G,465T,519C 73G,263G,309.1C,315.1C,522-,523- 1 1
H1 051G,519C 246G,263G,309.1C,315.1C 1 1
HV1 067T,183C,189C,519C 152C,263G,309.1C,309.2C,315.1C 1 1
H11a 092C,293G,311C 146C,195C,263G,315.1C 1 1
H1 093C,189C,368C,519C 263G,315.1C 1 1
H10 093C,221T,316G,519C 263G,309.1C,315.1C 2 4
H10 093C,221T,519C 152C,263G,309.1C,315.1C 1 1
H10 093C,221T,519C 263G,309.1C,315.1C 1 1
H10 093C,221T,519C 263G,315.1C 1 1
H* 093C,291T,519C 152C,263G,315.1C 1 1
H6a 093C,362C,482G 239C,263G,315.1C 2 4
H* 093C,519C 152C,263G,309.1C,315.1C 1 1
H3 093C,519C 263G,309.1C,315.1C,408A 1 1
H10 093C,519C 93G,263G,309.1C,315.1C,522-,523- 1 1
H3 093C,519C 93G,263G,315.1C 1 1
H11a 111T,293G,311C 151T,195C,263G,309.1C,309.2C,315.1C 1 1
H10 114T,519C 199C,263G,315.1C 1 1
H10 114T,519C 263G,309.1C,309.2C,315.1C 1 1
H1 114T,519C 263G,315.1C 1 1
HV0 126C,298C,346C 72C,200G,263G,315.1C,522-,523- 3 9
H2a2 129A 152C,263G,309.1C,309.2C,315.1C 1 1
H2a2 129A 152C,309.1C,309.2C,315.1C 1 1
H13a1 129A 263G,309.1C,315.1C 1 1
H1a1 129A,162G,209C,519C 73G,263G,315.1C 1 1
H1b 129A,189C,355T,356C,362C,519C 263G,309.1C,309.2C,315.1C,522-,523- 1 1
H6a 129A,249C,362C,482G 63C,64T,66A,239C,263G,315.1C 6 36
H5 129A,304C 263G,309.1C,315.1C,456T 1 1
H* 129A,316G,519C 263G,315.1C,521G 1 1
H1c 129A,519C 195C,263G,315.1C,477C,513A 1 1
H1a 129A,519C 256T,263G,315.1C 1 1
H3b 129A,519C 263G,309.1C,309.2C,315.1C,524.1C,524.2A 1 1
H3 129A,519C 263G,315.1C 1 1
H11 140C,293G,311C 195C,263G,315.1C 1 1
H1 148T,519C 263G,315.1C 1 1
H3 148T,519C 263G,315.1C 1 1
H1 153A,519C 146C,195C,263G,309.1C,315.1C 1 1
H1a1 162G,174T,209C,519C 73G,263G,309.1C,315.1C 1 1
H1 162G,209C,519C 73G,263G,309.1C,315.1C 1 1
H1a 162G,209C,519C 73G,263G,315.1C 1 1
H1a1 162G,209C,519C 73G,263G,315.1C 1 1
H1a 162G,290G,519C 73G,263G,309.1C,315.1C 1 1
H1 162G,519C 73G,263G,309.1C,315.1C 3 9
H1a 162G,519C 73G,263G,309.1C,315.1C 1 1
H1a 162G,519C 73G,263G,309.1C,315.1C,545A 1 1
H7 168T,519C 263G,315.1C 1 1
H1b 172C,183C,189C,356C,362C,519C 263G,315.1C,522-,523- 1 1
H5a 172C,304C,311C 146C,263G,309.1C,315.1C,456T 1 1
H5a1 172C,304C,311C 152C,263G,315.1C,444G,456T,522-,523- 1 1
H5a 172C,304C,311C 263G,315.1C,444G,456T,522-,523- 1 1
H5a1 172C,304C,311C 263G,315.1C,444G,456T,522-,523- 4 16
H* 172C,519C 263G,309.1C,315.1C 4 16
H1 177G,519C 151T,152C,263G,315.1C 1 1
H14 183C,189C,256T,352C 95C,152C,263G,309.1C,315.1C,396T 1 1
H1 183C,189C,519C 152C,263G,315.1C 1 1
H4a 184T 73G,263G,315.1C,522-,523- 1 1
H* 189C,299G,422C,519C 263G,309.1C,309.2C,315.1C 1 1
H6b 189C,300G,362C,482G 44.1C,152C,214G,239C,263G,309.1C,309.2C,315.1C,533G 1 1
H1b 189C,356C 263G,309.1C,315.1C 1 1
H1b 189C,356C,362C,519C 263G,315.1C,522-,523- 1 1
H1 189C,519C 146C,152C,263G,309.1C,309.2C,315.1C 2 4
H1 189C,519C 263G,309.1C,309.2C,315.1C 1 1
H1 189C,519C 263G,315.1C 1 1
H6a1 193T,219G,362C,482G 204C,239C,263G,309.1C,309.2C,315.1C,524.1C,524.2A 1 1
H6a1 193T,219G,362C,482G 204C,239C,263G,309.1C,315.1C 1 1
H7 193T,519C 152C,263G,315.1C 1 1
H4a 209C 152C,263G,309.1C,315.1C,522-,523- 1 1
H5a1 209C,304C,519C 263G,309.1C,309.2C,315.1C,456T 1 1
H2a 209C,519C 263G,309.1C,315.1C,512C 1 1
H10 221T,519C 263G,309.1C,315.1C 2 4
H16 223T,519C 263G,315.1C 1 1
H8 224C,288C,362C,519C 114T,146C,152C,195C,263G,315.1C 3 9
H2a2 235G,290T,291T 152C,263G,309.1C,309.2C,315.1C 1 1
H2a2 235G,291T 146C,263G,309.1C,309.2C,315.1C 1 1
H2a2 235G,291T 263G,309.1C,315.1C 1 1
H2a2 235G,291T,293G,400T 263G,309.1C,309.2C,315.1C 1 1
H2a2 235G,291T,293G,400T 263G,309.1C,315.1C 1 1
H2a2 235G,293G,400T 263G,309.1C,309.2C,315.1C 1 1
H3 239G,519C 152C,263G,309.1C,309.2C,315.1C 1 1
H1 243C,519C 263G,309.1C,315.1C 1 1
H1 248T,519C 200G,263G,309.1C,315.1C 1 1
H6a1 249C,362C,482G 152C,239C,263G,315.1C 1 1
H6a 249C,362C,482G 239C,263G,315.1C 2 4
H* 254G,311C,519C 263G,315.1C 1 1
H1b 254G,356C,519C 263G,309.1C,309.2C,315.1C 1 1
H11 256T,293G,311C,525G 195C,263G,309.1C,309.2C,315.1C 1 1
H2a2 259T,519C 189G,309.1C,315.1C 1 1
H13a1 261T,311C 152C,263G,309.1C,309.2C,315.1C 1 1
H13a1 261T,311C 263G,309.1C,309.2C,315.1C 1 1
H13 261T,519C 200G,263G,315.1C,522-,523- 1 1
H13 261T,519C 263G,315.1C 1 1
H1 263C,519C 234G,263G,309.1C,315.1C,477C 1 1
H1c1 263C,519C 263G,315.1C,477C 1 1
H2a2 270T 309.1C,309.2C,315.1C 1 1
H13a1 278T,311C,519C 263G,309.1C,309.2C,315.1C,385G 1 1
H1 278T,519C 195C,263G,315.1C,524.1C,524.2A 1 1
H* 278T,519C 73G,263G,315.1C 1 1
H4 287T 263G,315.1C 1 1
H4a1a 287T 73G,146C,263G,315.1C,522-,523- 1 1
H8 288C,362C 146C,152C,195C,263G,315.1C 1 1
H2a 291T,519C 263G,309.1C,315.1C 1 1
H11 293G,311C 146C,195C,263G,315.1C 1 1
H11a 293G,311C 152C,195C,263G,309.1C,309.2C,315.1C 1 1
H11 293G,311C 195C,228A,263G,309.1C,309.2C,315.1C 1 1
H11a 293G,311C 195C,263G,309.1C,315.1C 1 1
H* 293G,519C 236C,263G,309.1C,315.1C 1 1
HV0 298C 72C,195C,263G,309.1C,315.1C 1 1
HV* 298C,311C 195C,263G,309.1C,309.2C,315.1C 1 1
H1 299G,519C 150T,263G,309.1C,315.1C 1 1
H* 299G,519C 263G,309.1C,315.1C 2 4
H1 302G,519C 263G,309.1C,315.1C 1 1
H5 304C 146C,263G,309.1C,315.1C,456T 1 1
H5a 304C 152C,263G,309.1C,315.1C,456T,513A 2 4
H5a 304C 199C,263G,309.1C,315.1C,456T,513A 1 1
H5 304C 263G,309.1C,309.2C,315.1C,327T,456T 1 1
H5a 304C 263G,315.1C,456T,522-,523- 1 1
H5a1 304C 263G,315.1C,456T,522-,523- 1 1
H5a1 304C 73G,263G,315.1C,456T,522-,523- 6 36
H5a 304C,311C,362C 263G,309.1C,315.1C,456T 1 1
H5a1 304C,519C 152C,263G,309.1C,315.1C,456T,522-,523- 5 25
H5 304C,519C 263G,309.1C,309.2C,315.1C,456T 1 1
H5a1 304C,519C 263G,309.1C,315.1C,456T,522-,523- 1 1
HV* 311C 131C,152C,207A,263G,309.1C,315.1C 1 1
HV* 311C 200G,227G,263G,309.1C,315.1C 1 1
HV* 311C 263G,309.1C,315.1C 2 4
H* 311C 263G,315.1C 1 1
H* 311C,519C 263G,315.1C 1 1
H1 311C,519C 263G,315.1C 1 1
H3 311C,519C 263G,315.1C 1 1
H3 311C,519C 93G,263G,315.1C 1 1
H* 319A,519C 72G,146C,195C,263G,309.1C,309.2C,315.1C 1 1
H* 319A,519C 72G,146C,195C,263G,309.1C,315.1C 1 1
H1c2 325C,519C 195C,263G,315.1C,477C 1 1
H1 325C,519C 263G,315.1C,520T,573.1C 1 1
H2a1 354T 73G,263G,309.1C,315.1C 1 1
H6a1 362C,482G 239C,263G,309.1C,309.2C,315.1C 1 1
H15 366T 55C,56.1C,263G,309.1C,315.1C 1 1
H1 468C,519C 146C,263G,309.1C,309.2C,315.1C,524.1C,524.2A 1 1
H* 519C 146C,152C,263G,315.1C 3 9
H1 519C 146C,153G,263G,309.1C,315.1C,524.1C,524.2A 1 1
H1 519C 146C,195C,263G,315.1C,471C 1 1
H* 519C 150T,195C,263G,309.1C,309.2C,315.1C 1 1
H* 519C 150T,263G,309.1C,309.2C,315.1C 1 1
H1 519C 150T,263G,309.1C,315.1C 1 1
H16 519C 152C,195C,263G,309.1C,309.2C,315.1C 1 1
H* 519C 152C,200G,263G,315.1C 1 1
H3 519C 152C,263G,293C,309.1C,309.2C,315.1C 1 1
H1 519C 152C,263G,309.1C,309.2C,315.1C 1 1
H16 519C 152C,263G,309.1C,309.2C,315.1C 1 1
H1c 519C 152C,263G,309.1C,315.1C,477C 1 1
H* 519C 152C,263G,315.1C 1 1
H16 519C 152C,263G,315.1C 1 1
H1c 519C 152C,263G,315.1C,477C 2 4
H2a2 519C 183G,315.1C 1 1
H* 519C 186A,263G,309.1C,315.1C 1 1
H* 519C 186A,263G,315.1C 1 1
H3 519C 189G,263G,309.1C,309.2C,315.1C 1 1
H* 519C 194T,263G,315.1C 1 1
H* 519C 199C,263G,315.1C 1 1
H* 519C 235G,263G,315.1C 1 1
H2a 519C 249-,263G,309.1C,315.1C 1 1
H* 519C 263G,264T,315.1C 1 1
H1 519C 263G,267C,309.1C,309.2C,315.1C,485C 2 4
H7 519C 263G,291.1A,309.1C,315.1C 1 1
H7 519C 263G,291.1A,315.1C 1 1
H3 519C 263G,293C,309.1C,309.2C,315.1C 1 1
H* 519C 263G,309.1C,309.2C 1 1
H1 519C 263G,309.1C,309.2C,315.1C 1 1
H2a 519C 263G,309.1C,309.2C,315.1C 1 1
H3 519C 263G,309.1C,309.2C,315.1C 1 1
H1 519C 263G,309.1C,309.2C,315.1C,477C 2 4
H* 519C 263G,309.1C,309.2C,315.1C,524.1C,524.2A 1 1
H* 519C 263G,309.1C,315.1C 1 1
H1 519C 263G,309.1C,315.1C 2 4
H* 519C 263G,309.1C,315.1C,499A,524.1C,524.2A 1 1
H* 519C 263G,315.1C 1 1
H1 519C 263G,315.1C 1 1
H16 519C 263G,315.1C 1 1
H3 519C 263G,315.1C 1 1
H7 519C 263G,315.1C 2 4
H1 519C 263G,315.1C,477C 1 1
H* 519C 73G,263G,309.1C,315.1C 1 1
H* 519C 73G,263G,315.1C,573.1C,573.2C 1 1
H1 519C 93G,263G,315.1C 1 1
H1 519C 93G,263G,315.1C,513A 1 1
H1 519C,527T 263G,315.1C 1 1
H13 CRS 150T,263G,310C 1 1
H* CRS 151T,152C,263G,309.1C,315.1C 1 1
H2a2 CRS 152C,309.1C,309.2C,315.1C 1 1
H4a CRS 195C,263G,315.1C,513A,522-,523- 1 1
H4a1 CRS 195C,263G,315.1C,522-,523- 1 1
H13a1 CRS 263G,309.1C,309.2C,315.1C 3 9
H4a CRS 263G,309.1C,309.2C,315.1C,522-,523-,533G 1 1
H* CRS 263G,309.1C,315.1C 1 1
HV* CRS 263G,309.1C,315.1C 1 1
H* CRS 263G,315.1C 1 1
HV* CRS 263G,315.1C 1 1
H4a CRS 263G,315.1C,522-,523- 1 1
H2a2 CRS 315.1C 1 1
H4a1a CRS 73G,263G,309.1C,315.1C,522-,523- 1 1
H4a1a CRS 73G,263G,315.1C,522-,523- 1 1
H2a2 CRS CRS 1 1

Convergence

A match between two people at HVR1&2 when combined with a probable paper trail should indicate a solid proof of their relationship. Chance convergence means that the match may be accepted when it should instead be discounted. For those who are seeking geographic origins chance convergence means misinterpretation of the migration patterns of drastically different branches of the tree. Twenty-one cases of inter-subclade and inter-Haplogroup convergence have been found. They are shown here with the major subclades they fall in.

Hg HVR1 (16000+) HVR2
H1 129A,519C 263G,315.1C
H3 129A,519C 263G,315.1C

Hg HVR1 (16000+) HVR2
H1 148T,519C 263G,315.1C
H3 148T,519C 263G,315.1C

Hg HVR1 (16000+) HVR2
H1 162G,519C 73G,263G,309.1C,315.1C
H2 162G,519C 73G,263G,309.1C,315.1C

Hg HVR1 (16000+) HVR2
H1 189C,519C 263G,309.1C,309.2C,315.1C
H3 189C,519C 263G,309.1C,309.2C,315.1C

Hg HVR1 (16000+) HVR2
H* 189C,519C 263G,315.1C
H1 189C,519C 263G,315.1C

Hg HVR1 (16000+) HVR2
H* 311C,519C 263G,315.1C
H1 311C,519C 263G,315.1C
H3 311C,519C 263G,315.1C

Hg HVR1 (16000+) HVR2
H* 311C,519C 93G,263G,315.1C
H3 311C,519C 93G,263G,315.1C

Hg HVR1 (16000+) HVR2
H* 362C,519C 263G,309.1C,309.2C,315.1C
H2 362C,519C 263G,309.1C,309.2C,315.1C

Hg HVR1 (16000+) HVR2
H* 519C 146C,263G,309.1C,315.1C
H1 519C 146C,263G,309.1C,315.1C

Hg HVR1 (16000+) HVR2
H1 519C 146C,263G,315.1C
H3 519C 146C,263G,315.1C

Hg HVR1 (16000+) HVR2
H1 519C 152C,263G,309.1C,309.2C,315.1C
H3 519C 152C,263G,309.1C,309.2C,315.1C
H16 519C 152C,263G,309.1C,309.2C,315.1C

Hg HVR1 (16000+) HVR2
H* 519C 152C,263G,315.1C
H1 519C 152C,263G,315.1C
H3 519C 152C,263G,315.1C
H7 519C 152C,263G,315.1C
H16 519C 152C,263G,315.1C

Hg HVR1 (16000+) HVR2
H1 519C 152C,263G,315.1C,524.1C,524.2A
H3 519C 152C,263G,315.1C,524.1C,524.2A

Hg HVR1 (16000+) HVR2
H1 519C 263G,309.1C,309.2C,315.1C
H2 519C 263G,309.1C,309.2C,315.1C
H3 519C 263G,309.1C,309.2C,315.1C
H7 519C 263G,309.1C,309.2C,315.1C

Hg HVR1 (16000+) HVR2
H* 519C 263G,309.1C,309.2C,315.1C,524.1C,524.2A
H10 519C 263G,309.1C,309.2C,315.1C,524.1C,524.2A

Hg HVR1 (16000+) HVR2
H* 519C 263G,309.1C,315.1C
H1 519C 263G,309.1C,315.1C
H2 519C 263G,309.1C,315.1C
H3 519C 263G,309.1C,315.1C
H7 519C 263G,309.1C,315.1C
H10 519C 263G,309.1C,315.1C
H13 519C 263G,309.1C,315.1C

Hg HVR1 (16000+) HVR2
H1 519C 263G,309.1C,315.1C,522-,523-
H3 519C 263G,309.1C,315.1C,522-,523-

Hg HVR1 (16000+) HVR2
H* 519C 263G,315.1C
H1 519C 263G,315.1C
H3 519C 263G,315.1C
H7 519C 263G,315.1C
H16 519C 263G,315.1C

Hg HVR1 (16000+) HVR2
H1 CRS 263G,309.1C,309.2C,315.1C
H7 CRS 263G,309.1C,309.2C,315.1C
H13 CRS 263G,309.1C,309.2C,315.1C

Hg HVR1 (16000+) HVR2
H* CRS 263G,309.1C,315.1C
H13 CRS 263G,309.1C,315.1C
HV* CRS 263G,309.1C,315.1C

Hg HVR1 (16000+) HVR2
H* CRS 263G,315.1C
H4 CRS 263G,315.1C
HV* CRS 263G,315.1C

These include some of the most common haplotypes in the project. It remains to be seen if additional cases of convergence emerge as geographic sampling improves.

Full Genome Sequences

Full Genome Sequences were extracted at 245 samples. There were a total of 209 coding region motifs. This is a genetic diversity of 85.31%. The RMP was .64%. When HVR and coding region results were combined, there were 236 motifs. The genetic diversity was 96.33% and the RMP was .45%. Note the difference between this and the probabilities when current nomenclature from Rootsalu is used.

Discussion

In comparison to the last progress report, two things stand out. First the genetic diversity for all HVR testing has dropped. I think that this is reflective of the expanding size of the sample. Countering this is a drop in the RMP. This may be reflective of the move away from a British Isles sample bias. As x=1 has a stronger pull on this calculation and singletons may be found more often in the lightly sampled countries. I look forward to reexamining this next year.

The last year has seen the project's membership stabilize. The co-administrators have started going through members' profiles and confirming ancestry information. This will provide us with a stronger basis for analysis. The last few months have seen two tools become available to us. We may now see, as well as our HVR match lists, a list of our FGS matches. The FTDNA MyMaps utility allows us to visualize our own ancestors from a geographic perspective. I would like to request that everyone consider the tools they would like to see offered and let us know.

Though the number of countries represented has increased, there are still too many that only have a handful of exemplars. I hope in the coming year to see more people transfer their results from the Genographic Project and join. To improve our understanding of our ancestral origins brief country profiles will be added. These will explain the major events that impacted the country and its cultures with a focus on how they impacted women's lives.

The inevitable downside to there being such a low match rate among genealogists who take the FGS test is that it is hard then to compile a statistically significant number of matches.

Moving forward Dr. Behar is working to build a comprehensive tree that will substantially revise the current one and address inconsistencies. I urge all to consider submitting your sample for anonymous inclusion and we look forward to hearing more on that.

ISOGG has initiated a committee that is working to create a professional mtDNA tree of the same quality, reliability, and correctness that has earned their ySNP tree citation in recent published papers. Those who have struggled to read published mtDNA studies will appreciate the necessity of such a tree in the face of an expanding number of subclades.

Thank you

The next progress report will be in early March 2009.

Thank you to the subclade coordinators for all they do and being willing to tackle the project. Many thanks to all who have volunteered their knowledge and time to explaining how things work.

Thank you Hs and HVs for your great work!


Rebekah

The mtDNA H Haplogroup Project


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progress/2008.txt · Last modified: 03/05/2008 15:13 by goddess